Directed evolution: methodologies and applications
Directed evolution aims to expedite the natural evolution process of biological molecules
and systems in a test tube through iterative rounds of gene diversifications and library …
and systems in a test tube through iterative rounds of gene diversifications and library …
[HTML][HTML] In vivo hypermutation and continuous evolution
Directed evolution has revolutionized biomolecular engineering by applying cycles of
mutation, amplification and selection to genes of interest (GOIs). However, classical directed …
mutation, amplification and selection to genes of interest (GOIs). However, classical directed …
Phage-assisted evolution of an adenine base editor with improved Cas domain compatibility and activity
Applications of adenine base editors (ABEs) have been constrained by the limited
compatibility of the deoxyadenosine deaminase component with Cas homologs other than …
compatibility of the deoxyadenosine deaminase component with Cas homologs other than …
[HTML][HTML] Phage-assisted evolution and protein engineering yield compact, efficient prime editors
Prime editing enables a wide variety of precise genome edits in living cells. Here we use
protein evolution and engineering to generate prime editors with reduced size and improved …
protein evolution and engineering to generate prime editors with reduced size and improved …
Continuous evolution of SpCas9 variants compatible with non-G PAMs
The targeting scope of Streptococcus pyogenes Cas9 (SpCas9) and its engineered variants
is largely restricted to protospacer-adjacent motif (PAM) sequences containing G bases …
is largely restricted to protospacer-adjacent motif (PAM) sequences containing G bases …
Continuous evolution of base editors with expanded target compatibility and improved activity
BW Thuronyi, LW Koblan, JM Levy, WH Yeh… - Nature …, 2019 - nature.com
Base editors use DNA-modifying enzymes targeted with a catalytically impaired CRISPR
protein to precisely install point mutations. Here, we develop phage-assisted continuous …
protein to precisely install point mutations. Here, we develop phage-assisted continuous …
Deep mutational scanning: a new style of protein science
Mutagenesis provides insight into proteins, but only recently have assays that couple
genotype to phenotype been used to assess the activities of as many as 1 million mutant …
genotype to phenotype been used to assess the activities of as many as 1 million mutant …
Epistasis in protein evolution
TN Starr, JW Thornton - Protein science, 2016 - Wiley Online Library
The structure, function, and evolution of proteins depend on physical and genetic
interactions among amino acids. Recent studies have used new strategies to explore the …
interactions among amino acids. Recent studies have used new strategies to explore the …
Causes of molecular convergence and parallelism in protein evolution
JF Storz - Nature Reviews Genetics, 2016 - nature.com
To what extent is the convergent evolution of protein function attributable to convergent or
parallel changes at the amino acid level? The mutations that contribute to adaptive protein …
parallel changes at the amino acid level? The mutations that contribute to adaptive protein …
[HTML][HTML] Systematic molecular evolution enables robust biomolecule discovery
EA DeBenedictis, EJ Chory, DW Gretton, B Wang… - Nature …, 2022 - nature.com
Evolution occurs when selective pressures from the environment shape inherited variation
over time. Within the laboratory, evolution is commonly used to engineer proteins and RNA …
over time. Within the laboratory, evolution is commonly used to engineer proteins and RNA …