Phylogenetic tree building in the genomic age

P Kapli, Z Yang, MJ Telford - Nature Reviews Genetics, 2020 - nature.com
Knowing phylogenetic relationships among species is fundamental for many studies in
biology. An accurate phylogenetic tree underpins our understanding of the major transitions …

Phylum Nematoda: a classification, catalogue and index of valid genera, with a census of valid species

M Hodda - Zootaxa, 2022 - biotaxa.org
A classification of the entire Phylum Nematoda is presented, based on current molecular,
developmental and morphological evidence. The classification reflects the evolutionary …

Modeling site heterogeneity with posterior mean site frequency profiles accelerates accurate phylogenomic estimation

HC Wang, BQ Minh, E Susko, AJ Roger - Systematic biology, 2018 - academic.oup.com
Proteins have distinct structural and functional constraints at different sites that lead to site-
specific preferences for particular amino acid residues as the sequences evolve …

Topology-dependent asymmetry in systematic errors affects phylogenetic placement of Ctenophora and Xenacoelomorpha

P Kapli, MJ Telford - Science advances, 2020 - science.org
The evolutionary relationships of two animal phyla, Ctenophora and Xenacoelomorpha,
have proved highly contentious. Ctenophora have been proposed as the most distant …

The origin of animals: an ancestral reconstruction of the unicellular-to-multicellular transition

N Ros-Rocher, A Pérez-Posada, MM Leger… - Open …, 2021 - royalsocietypublishing.org
How animals evolved from a single-celled ancestor, transitioning from a unicellular lifestyle
to a coordinated multicellular entity, remains a fascinating question. Key events in this …

[图书][B] The structure of evolutionary theory

SJ Gould - 2002 - degruyter.com
The world's most revered and eloquent interpreter of evolutionary ideas offers here a work of
explanatory force unprecedented in our time—a landmark publication, both for its historical …

The evolutionary fate and consequences of duplicate genes

M Lynch, JS Conery - science, 2000 - science.org
Gene duplication has generally been viewed as a necessary source of material for the origin
of evolutionary novelties, but it is unclear how often gene duplicates arise and how …

Conservation of the sequence and temporal expression of let-7 heterochronic regulatory RNA

AE Pasquinelli, BJ Reinhart, F Slack, MQ Martindale… - Nature, 2000 - nature.com
Two small RNAs regulate the timing of Caenorhabditis elegans development,. Transition
from the first to the second larval stage fates requires the 22-nucleotide lin-4 RNA,,, and …

The let-7 family of microRNAs

S Roush, FJ Slack - Trends in cell biology, 2008 - cell.com
The first two known microRNAs (miRNAs), lin-4 and let-7, were originally discovered in the
nematode Caenorhabditis elegans and control the timing of stem-cell division and …

A molecular evolutionary framework for the phylum Nematoda

ML Blaxter, P De Ley, JR Garey, LX Liu, P Scheldeman… - Nature, 1998 - nature.com
Nematodes are important: parasitic nematodes threaten the health of plants, animals and
humans on a global scale,; interstitial nematodes pervade sediment and soil ecosystems in …