[HTML][HTML] Understanding MAPK signaling pathways in apoptosis

J Yue, JM López - International journal of molecular sciences, 2020 - mdpi.com
MAPK (mitogen-activated protein kinase) signaling pathways regulate a variety of biological
processes through multiple cellular mechanisms. In most of these processes, such as …

[HTML][HTML] The membrane surface as a platform that organizes cellular and biochemical processes

TA Leonard, M Loose, S Martens - Developmental cell, 2023 - cell.com
Membranes are essential for life. They act as semi-permeable boundaries that define cells
and organelles. In addition, their surfaces actively participate in biochemical reaction …

T cell circuits that sense antigen density with an ultrasensitive threshold

RA Hernandez-Lopez, W Yu, KA Cabral, OA Creasey… - Science, 2021 - science.org
Overexpressed tumor-associated antigens [for example, epidermal growth factor receptor
(EGFR) and human epidermal growth factor receptor 2 (HER2)] are attractive targets for …

[图书][B] Stochastic processes in cell biology

PC Bressloff - 2014 - Springer
One of the major challenges in modern biology is to understand how the molecular
components of a living cell operate in a highly noisy environment. What are the specific …

Synthetic multistability in mammalian cells

R Zhu, JM del Rio-Salgado, J Garcia-Ojalvo… - Science, 2022 - science.org
In multicellular organisms, gene regulatory circuits generate thousands of molecularly
distinct, mitotically heritable states through the property of multistability. Designing synthetic …

[HTML][HTML] Programmable protein circuit design

Z Chen, MB Elowitz - Cell, 2021 - cell.com
A fundamental challenge in synthetic biology is to create molecular circuits that can program
complex cellular functions. Because proteins can bind, cleave, and chemically modify one …

Engineered dCas9 with reduced toxicity in bacteria: implications for genetic circuit design

S Zhang, CA Voigt - Nucleic acids research, 2018 - academic.oup.com
Large synthetic genetic circuits require the simultaneous expression of many regulators.
Deactivated Cas9 (dCas9) can serve as a repressor by having a small guide RNA (sgRNA) …

Design principles of 3D epigenetic memory systems

JA Owen, D Osmanović, L Mirny - Science, 2023 - science.org
Cells remember their identities, in part, by using epigenetic marks—chemical modifications
placed along the genome. How can mark patterns remain stable over cell generations …

Complex signal processing in synthetic gene circuits using cooperative regulatory assemblies

CJ Bashor, N Patel, S Choubey, A Beyzavi, J Kondev… - Science, 2019 - science.org
Eukaryotic genes are regulated by multivalent transcription factor complexes. Through
cooperative self-assembly, these complexes perform nonlinear regulatory operations …

[HTML][HTML] Size limits the sensitivity of kinetic schemes

JA Owen, JM Horowitz - Nature Communications, 2023 - nature.com
Living things benefit from exquisite molecular sensitivity in many of their key processes,
including DNA replication, transcription and translation, chemical sensing, and …