Molecular ecology of microbial mats
Phototrophic microbial mats are ideal model systems for ecological and evolutionary
analysis of highly diverse microbial communities. Microbial mats are small-scale, nearly …
analysis of highly diverse microbial communities. Microbial mats are small-scale, nearly …
Shallow freshwater ecosystems of the circumpolar Arctic
This review provides a synthesis of limnological data and conclusions from studies on ponds
and small lakes at our research sites in Subarctic and Arctic Canada, Alaska, northern …
and small lakes at our research sites in Subarctic and Arctic Canada, Alaska, northern …
Global biogeography of microbial nitrogen-cycling traits in soil
MB Nelson, AC Martiny… - Proceedings of the …, 2016 - National Acad Sciences
Microorganisms drive much of the Earth's nitrogen (N) cycle, but we still lack a global
overview of the abundance and composition of the microorganisms carrying out soil N …
overview of the abundance and composition of the microorganisms carrying out soil N …
[HTML][HTML] Ray Meta: scalable de novo metagenome assembly and profiling
S Boisvert, F Raymond, É Godzaridis, F Laviolette… - Genome biology, 2012 - Springer
Abstracta Voluminous parallel sequencing datasets, especially metagenomic experiments,
require distributed computing for de novo assembly and taxonomic profiling. Ray Meta is a …
require distributed computing for de novo assembly and taxonomic profiling. Ray Meta is a …
Microbes in high arctic snow and implications for the cold biosphere
T Harding, AD Jungblut, C Lovejoy… - Applied and …, 2011 - Am Soc Microbiol
We applied molecular, microscopic, and culture techniques to characterize the microbial
communities in snow and air at remote sites in the Canadian High Arctic (Ward Hunt Island …
communities in snow and air at remote sites in the Canadian High Arctic (Ward Hunt Island …
[HTML][HTML] Genomic and metabolic adaptations of biofilms to ecological windows of opportunity in glacier-fed streams
In glacier-fed streams, ecological windows of opportunity allow complex microbial biofilms to
develop and transiently form the basis of the food web, thereby controlling key ecosystem …
develop and transiently form the basis of the food web, thereby controlling key ecosystem …
Metagenomic analysis of stress genes in microbial mat communities from Antarctica and the High Arctic
T Varin, C Lovejoy, AD Jungblut… - Applied and …, 2012 - Am Soc Microbiol
Polar and alpine microbial communities experience a variety of environmental stresses,
including perennial cold and freezing; however, knowledge of genomic responses to such …
including perennial cold and freezing; however, knowledge of genomic responses to such …
[HTML][HTML] Biochar and rhizobacteria amendments improve several soil properties and bacterial diversity
In the current context, there is a growing interest in reducing the use of chemical fertilizers
and pesticides to promote ecological agriculture. The use of biochar and plant growth …
and pesticides to promote ecological agriculture. The use of biochar and plant growth …
Analysis of bacterial and archaeal diversity in coastal microbial mats using massive parallel 16S rRNA gene tag sequencing
Coastal microbial mats are small-scale and largely closed ecosystems in which a plethora of
different functional groups of microorganisms are responsible for the biogeochemical cycling …
different functional groups of microorganisms are responsible for the biogeochemical cycling …
[HTML][HTML] Assessing the performance of different approaches for functional and taxonomic annotation of metagenomes
Background Metagenomes can be analysed using different approaches and tools. One of
the most important distinctions is the way to perform taxonomic and functional assignment …
the most important distinctions is the way to perform taxonomic and functional assignment …