Molecular ecology of microbial mats

H Bolhuis, MS Cretoiu, LJ Stal - FEMS microbiology ecology, 2014 - academic.oup.com
Phototrophic microbial mats are ideal model systems for ecological and evolutionary
analysis of highly diverse microbial communities. Microbial mats are small-scale, nearly …

Shallow freshwater ecosystems of the circumpolar Arctic

M Rautio, F Dufresne, I Laurion, S Bonilla… - Ecoscience, 2011 - Taylor & Francis
This review provides a synthesis of limnological data and conclusions from studies on ponds
and small lakes at our research sites in Subarctic and Arctic Canada, Alaska, northern …

Global biogeography of microbial nitrogen-cycling traits in soil

MB Nelson, AC Martiny… - Proceedings of the …, 2016 - National Acad Sciences
Microorganisms drive much of the Earth's nitrogen (N) cycle, but we still lack a global
overview of the abundance and composition of the microorganisms carrying out soil N …

[HTML][HTML] Ray Meta: scalable de novo metagenome assembly and profiling

S Boisvert, F Raymond, É Godzaridis, F Laviolette… - Genome biology, 2012 - Springer
Abstracta Voluminous parallel sequencing datasets, especially metagenomic experiments,
require distributed computing for de novo assembly and taxonomic profiling. Ray Meta is a …

Microbes in high arctic snow and implications for the cold biosphere

T Harding, AD Jungblut, C Lovejoy… - Applied and …, 2011 - Am Soc Microbiol
We applied molecular, microscopic, and culture techniques to characterize the microbial
communities in snow and air at remote sites in the Canadian High Arctic (Ward Hunt Island …

[HTML][HTML] Genomic and metabolic adaptations of biofilms to ecological windows of opportunity in glacier-fed streams

SB Busi, M Bourquin, S Fodelianakis… - Nature …, 2022 - nature.com
In glacier-fed streams, ecological windows of opportunity allow complex microbial biofilms to
develop and transiently form the basis of the food web, thereby controlling key ecosystem …

Metagenomic analysis of stress genes in microbial mat communities from Antarctica and the High Arctic

T Varin, C Lovejoy, AD Jungblut… - Applied and …, 2012 - Am Soc Microbiol
Polar and alpine microbial communities experience a variety of environmental stresses,
including perennial cold and freezing; however, knowledge of genomic responses to such …

[HTML][HTML] Biochar and rhizobacteria amendments improve several soil properties and bacterial diversity

H Ren, B Huang, V Fernández-García, J Miesel, L Yan… - Microorganisms, 2020 - mdpi.com
In the current context, there is a growing interest in reducing the use of chemical fertilizers
and pesticides to promote ecological agriculture. The use of biochar and plant growth …

Analysis of bacterial and archaeal diversity in coastal microbial mats using massive parallel 16S rRNA gene tag sequencing

H Bolhuis, LJ Stal - The ISME journal, 2011 - academic.oup.com
Coastal microbial mats are small-scale and largely closed ecosystems in which a plethora of
different functional groups of microorganisms are responsible for the biogeochemical cycling …

[HTML][HTML] Assessing the performance of different approaches for functional and taxonomic annotation of metagenomes

J Tamames, M Cobo-Simón, F Puente-Sánchez - BMC genomics, 2019 - Springer
Background Metagenomes can be analysed using different approaches and tools. One of
the most important distinctions is the way to perform taxonomic and functional assignment …