Pmc-patients: A large-scale dataset of patient summaries and relations for benchmarking retrieval-based clinical decision support systems

Z Zhao, Q Jin, F Chen, T Peng, S Yu - arXiv preprint arXiv:2202.13876, 2022 - arxiv.org
Objective: Retrieval-based Clinical Decision Support (ReCDS) can aid clinical workflow by
providing relevant literature and similar patients for a given patient. However, the …

Assessment of the E3C corpus for the recognition of disorders in clinical texts

R Zanoli, A Lavelli, DV do Amarante… - Natural Language …, 2024 - cambridge.org
Disorder named entity recognition (DNER) is a fundamental task of biomedical natural
language processing, which has attracted plenty of attention. This task consists in extracting …

Entity normalization in a Spanish medical corpus using a UMLS-based lexicon: findings and limitations

P Báez, L Campillos-Llanos, F Núñez… - Language Resources and …, 2024 - Springer
Entity normalization is a common strategy to resolve ambiguities by mapping all the
synonym mentions to a single concept identifier in standard terminology. Normalizing …

Few shot clinical entity recognition in three languages: Masked language models outperform LLM prompting

M Naguib, X Tannier, A Névéol - arXiv preprint arXiv:2402.12801, 2024 - arxiv.org
Large Language Models are becoming the go-to solution for many natural language
processing tasks, including in specialized domains where their few-shot capacities are …

Combining Contrastive Learning and Knowledge Graph Embeddings to develop medical word embeddings for the Italian language

DA Bondarenko, R Ferrod, LD Caro - … of the Italian Association for Artificial …, 2023 - Springer
Word embeddings play a significant role in today's Natural Language Processing tasks and
applications. However, there is a significant gap in the availability of high quality-word …

Get the Best out of 1B LLMs: Insights from Information Extraction on Clinical Documents

S Farzi, S Ghosh, A Lavelli… - Proceedings of the 23rd …, 2024 - aclanthology.org
While the popularity of large, versatile language models like ChatGPT continues to rise, the
landscape shifts when considering open-source models tailored to specific domains …

Reconnaissance d'entités cliniques en few-shot en trois langues

M Naguib, A Névéol, X Tannier - … , volume 1: articles longs et prises …, 2024 - inria.hal.science
Les grands modèles de langage deviennent la solution de choix pour de nombreuses
tâches de traitement du langage naturel, y compris dans des domaines spécialisés où leurs …

[PDF][PDF] Automatic Medical Knowledge Graph Construction

J Pardo–Ferrera - 2024 - ceur-ws.org
Abstract Knowledge Graphs are crucial for structuring and integrating large amounts of data,
improving decisionmaking and data interoperability, especially in the healthcare domain …

Stratégies d'apprentissage actif pour la reconnaissance d'entités nommées en français

M Naguib, A Névéol, X Tannier - … en RI--30e Conférence sur le …, 2023 - hal.science
L'annotation manuelle de corpus est un processus coûteux et lent, notamment pour la tâche
de re-connaissance d'entités nommées. L'apprentissage actif vise à rendre ce processus …

Graph Neural Network pipeline for unsupervised clinical document analysis

G Moro - 2023 - politesi.polimi.it
Most clinical documents are present in the form of unstructured data ie textual data.
However, in order to apply automatic learning methods of the content, it is necessary to …