[HTML][HTML] Structure-based virtual screening: from classical to artificial intelligence
EHB Maia, LC Assis, TA De Oliveira… - Frontiers in …, 2020 - frontiersin.org
The drug development process is a major challenge in the pharmaceutical industry since it
takes a substantial amount of time and money to move through all the phases of developing …
takes a substantial amount of time and money to move through all the phases of developing …
Structure-based virtual screening for drug discovery: principles, applications and recent advances
E Lionta, G Spyrou, DK Vassilatis… - Current topics in …, 2014 - ingentaconnect.com
Structure-based drug discovery (SBDD) is becoming an essential tool in assisting fast and
cost-efficient lead discovery and optimization. The application of rational, structure-based …
cost-efficient lead discovery and optimization. The application of rational, structure-based …
Rational approach toward COVID-19 main protease inhibitors via molecular docking, molecular dynamics simulation and free energy calculation
S Keretsu, SP Bhujbal, SJ Cho - Scientific reports, 2020 - nature.com
In the rapidly evolving coronavirus disease (COVID-19) pandemic, repurposing existing
drugs and evaluating commercially available inhibitors against druggable targets of the virus …
drugs and evaluating commercially available inhibitors against druggable targets of the virus …
AtomNet: a deep convolutional neural network for bioactivity prediction in structure-based drug discovery
Deep convolutional neural networks comprise a subclass of deep neural networks (DNN)
with a constrained architecture that leverages the spatial and temporal structure of the …
with a constrained architecture that leverages the spatial and temporal structure of the …
DOCK 6: Impact of new features and current docking performance
This manuscript presents the latest algorithmic and methodological developments to the
structure‐based design program DOCK 6.7 focused on an updated internal energy function …
structure‐based design program DOCK 6.7 focused on an updated internal energy function …
Beware of docking!
YC Chen - Trends in pharmacological sciences, 2015 - cell.com
Docking is now routine in virtual screening or lead optimization for drug screening and
design. The number of papers related to docking has dramatically increased over the past …
design. The number of papers related to docking has dramatically increased over the past …
Highly flexible ligand docking: Benchmarking of the DockThor program on the LEADS-PEP protein–peptide data set
Protein–peptide interactions play a crucial role in many cellular and biological functions,
which justify the increasing interest in the development of peptide-based drugs. However …
which justify the increasing interest in the development of peptide-based drugs. However …
Directory of useful decoys, enhanced (DUD-E): better ligands and decoys for better benchmarking
MM Mysinger, M Carchia, JJ Irwin… - Journal of medicinal …, 2012 - ACS Publications
A key metric to assess molecular docking remains ligand enrichment against challenging
decoys. Whereas the directory of useful decoys (DUD) has been widely used, clear areas for …
decoys. Whereas the directory of useful decoys (DUD) has been widely used, clear areas for …
Machine and deep learning approaches for cancer drug repurposing
Abstract Knowledge of the underpinnings of cancer initiation, progression and metastasis
has increased exponentially in recent years. Advanced “omics” coupled with machine …
has increased exponentially in recent years. Advanced “omics” coupled with machine …
Recent advances in molecular docking for the research and discovery of potential marine drugs
G Chen, AJ Seukep, M Guo - Marine drugs, 2020 - mdpi.com
Marine drugs have long been used and exhibit unique advantages in clinical practices.
Among the marine drugs that have been approved by the Food and Drug Administration …
Among the marine drugs that have been approved by the Food and Drug Administration …