Navigating multi-scale cancer systems biology towards model-driven clinical oncology and its applications in personalized therapeutics

MN Gondal, SU Chaudhary - Frontiers in Oncology, 2021 - frontiersin.org
Rapid advancements in high-throughput omics technologies and experimental protocols
have led to the generation of vast amounts of scale-specific biomolecular data on cancer …

Withanolide A offers neuroprotection, ameliorates stress resistance and prolongs the life expectancy of Caenorhabditis elegans

BA Akhoon, S Pandey, S Tiwari, R Pandey - Experimental gerontology, 2016 - Elsevier
Withanolide A (steroidal lactone) forms the major constituent of the most popular herbal drug
in Ayurvedic medicine, Ashwagandha. It has been used since ancient times as an …

Designing of Complex Multi-epitope Peptide Vaccine Based on Omps of Klebsiella pneumoniae: An In Silico Approach

T Farhadi, N Nezafat, Y Ghasemi, Z Karimi… - International Journal of …, 2015 - Springer
Klebsiella pneumoniae is a hospital-acquired pathogen that leads to various infections.
There is a great interest in developing an efficient Klebsiella vaccine and epitope-based …

Genome-wide scan for potential CD4+ T-cell vaccine candidates in Candida auris by exploiting reverse vaccinology and evolutionary information

SK Gupta, Ö Osmanoglu, R Minocha, SR Bandi… - Frontiers in …, 2022 - frontiersin.org
Candida auris is a globally emerging fungal pathogen responsible for causing nosocomial
outbreaks in healthcare associated settings. It is known to cause infection in all age groups …

In silico designing a candidate vaccine against breast cancer

A Atapour, M Negahdaripour, Y Ghasemi… - International Journal of …, 2020 - Springer
Breast cancer (BC) is the most common type of women's cancer with a prevalence of about
25%, although it is rare in men (< 1%). Until now, BC therapy approaches have not been …

Understanding the Mechanism of Atovaquone Drug Resistance in Plasmodium falciparum Cytochrome b Mutation Y268S Using Computational Methods

BA Akhoon, KP Singh, M Varshney, SK Gupta… - PLoS …, 2014 - journals.plos.org
The rapid appearance of resistant malarial parasites after introduction of atovaquone (ATQ)
drug has prompted the search for new drugs as even single point mutations in the active site …

Designing and Modeling of Complex DNA Vaccine Based on Tropomyosin Protein of Boophilus Genus Tick

MM Ranjbar, SK Gupta, K Ghorban, S Nabian… - Applied biochemistry …, 2015 - Springer
Boophilus tick is a bloodsucking ectoparasite that transfers some pathogens, reducing
production and thus leading to economical losses in the cattle industry. Tropomyosin (TPM) …

[HTML][HTML] In silico evaluation of two targeted chimeric proteins based on bacterial toxins for breast cancer therapy

Z Goleij, HM Hosseini, M Amin, J Amani… - International Journal of …, 2019 - brieflands.com
Background: Despite major advances in cancer research, breast cancer still remains the
most common cancer in women. Breast cancer is a heterogeneous disease, including at …

Designing of an epitope-based peptide vaccine against walking pneumonia: an immunoinformatics approach

PA Unni, AMMT Ali, M Rout, A Thabitha, S Vino… - Molecular biology …, 2019 - Springer
Mycoplasma pneumoniae is a substantial respiratory pathogen that develops not only
pneumonia but also other respiratory diseases, which mimic viral respiratory syndromes …

An antibiotic target ranking and prioritization pipeline combining sequence, structure and network-based approaches exemplified for Serratia marcescens

SK Gupta, R Gross, T Dandekar - Gene, 2016 - Elsevier
We investigate a drug target screening pipeline comparing sequence, structure and network-
based criteria for prioritization. Serratia marcescens, an opportunistic pathogen, serves as …