The evolutionary origin of orphan genes
D Tautz, T Domazet-Lošo - Nature Reviews Genetics, 2011 - nature.com
Gene evolution has long been thought to be primarily driven by duplication and
rearrangement mechanisms. However, every evolutionary lineage harbours orphan genes …
rearrangement mechanisms. However, every evolutionary lineage harbours orphan genes …
An integrated view of protein evolution
Why do proteins evolve at different rates? Advances in systems biology and genomics have
facilitated a move from studying individual proteins to characterizing global cellular factors …
facilitated a move from studying individual proteins to characterizing global cellular factors …
Deep learning suggests that gene expression is encoded in all parts of a co-evolving interacting gene regulatory structure
Understanding the genetic regulatory code governing gene expression is an important
challenge in molecular biology. However, how individual coding and non-coding regions of …
challenge in molecular biology. However, how individual coding and non-coding regions of …
A benchmark of gene expression tissue-specificity metrics
N Kryuchkova-Mostacci… - Briefings in …, 2017 - academic.oup.com
One of the major properties of genes is their expression pattern. Notably, genes are often
classified as tissue specific or housekeeping. This property is of interest to molecular …
classified as tissue specific or housekeeping. This property is of interest to molecular …
The quantitative proteome of a human cell line
The generation of mathematical models of biological processes, the simulation of these
processes under different conditions, and the comparison and integration of multiple data …
processes under different conditions, and the comparison and integration of multiple data …
Genomic signatures of mitonuclear coevolution across populations of Tigriopus californicus
The copepod Tigriopus californicus shows extensive population divergence and is
becoming a model for understanding allopatric differentiation and the early stages of …
becoming a model for understanding allopatric differentiation and the early stages of …
Mistranslation-induced protein misfolding as a dominant constraint on coding-sequence evolution
DA Drummond, CO Wilke - Cell, 2008 - cell.com
Strikingly consistent correlations between rates of coding-sequence evolution and gene
expression levels are apparent across taxa, but the biological causes behind the selective …
expression levels are apparent across taxa, but the biological causes behind the selective …
Why highly expressed proteins evolve slowly
Much recent work has explored molecular and population-genetic constraints on the rate of
protein sequence evolution. The best predictor of evolutionary rate is expression level, for …
protein sequence evolution. The best predictor of evolutionary rate is expression level, for …
Global proteome analysis of the NCI-60 cell line panel
The NCI-60 cell line collection is a very widely used panel for the study of cellular
mechanisms of cancer in general and in vitro drug action in particular. It is a model system …
mechanisms of cancer in general and in vitro drug action in particular. It is a model system …
A single determinant dominates the rate of yeast protein evolution
A gene's rate of sequence evolution is among the most fundamental evolutionary quantities
in common use, but what determines evolutionary rates has remained unclear. Here, we …
in common use, but what determines evolutionary rates has remained unclear. Here, we …