Twenty years of plant genome sequencing: achievements and challenges

Y Sun, L Shang, QH Zhu, L Fan, L Guo - Trends in Plant Science, 2022 - cell.com
Publication of the complete genome sequence of Arabidopsis thaliana, the first plant
reference genome, in December 2000 heralded the beginning of the plant genome era …

The integrated genomics of crop domestication and breeding

X Huang, S Huang, B Han, J Li - Cell, 2022 - cell.com
As a major event in human civilization, wild plants were successfully domesticated to be
crops, largely owing to continuing artificial selection. Here, we summarize new discoveries …

Genome evolution and diversity of wild and cultivated potatoes

D Tang, Y Jia, J Zhang, H Li, L Cheng, P Wang, Z Bao… - Nature, 2022 - nature.com
Potato (Solanum tuberosum L.) is the world's most important non-cereal food crop, and the
vast majority of commercially grown cultivars are highly heterozygous tetraploids. Advances …

Solanum americanum genome-assisted discovery of immune receptors that detect potato late blight pathogen effectors

X Lin, Y Jia, R Heal, M Prokchorchik… - Nature Genetics, 2023 - nature.com
Potato (Solanum tuberosum) and tomato (Solanum lycopersicon) crops suffer severe losses
to late blight caused by the oomycete pathogen Phytophthora infestans. Solanum …

Phased, chromosome-scale genome assemblies of tetraploid potato reveal a complex genome, transcriptome, and predicted proteome landscape underpinning …

G Hoopes, X Meng, JP Hamilton, SR Achakkagari… - Molecular plant, 2022 - cell.com
Cultivated potato is a clonally propagated autotetraploid species with a highly
heterogeneous genome. Phased assemblies of six cultivars including two chromosome …

Genome design of hybrid potato

C Zhang, Z Yang, D Tang, Y Zhu, P Wang, D Li, G Zhu… - Cell, 2021 - cell.com
Reinventing potato from a clonally propagated tetraploid into a seed-propagated diploid,
hybrid potato, is an important innovation in agriculture. Due to deleterious mutations, it has …

Chromosome-scale and haplotype-resolved genome assembly of a tetraploid potato cultivar

H Sun, WB Jiao, K Krause, JA Campoy, M Goel… - Nature …, 2022 - nature.com
Potato is the most widely produced tuber crop worldwide. However, reconstructing the four
haplotypes of its autotetraploid genome remained an unsolved challenge. Here, we report …

Enhancing crop diversity for food security in the face of climate uncertainty

A Zsögön, LEP Peres, Y Xiao, J Yan… - The plant …, 2022 - Wiley Online Library
Global agriculture is dominated by a handful of species that currently supply a huge
proportion of our food and feed. It additionally faces the massive challenge of providing food …

Plant pan-genomics and its applications

J Shi, Z Tian, J Lai, X Huang - Molecular Plant, 2023 - cell.com
Plant genomes are so highly diverse that a substantial proportion of genomic sequences are
not shared among individuals. The variable DNA sequences, along with the conserved core …

Allele-aware chromosome-level genome assembly of Artemisia annua reveals the correlation between ADS expansion and artemisinin yield

B Liao, X Shen, L Xiang, S Guo, S Chen, Y Meng… - Molecular plant, 2022 - cell.com
Artemisia annua is the major natural source of artemisinin, an anti-malarial medicine
commonly used worldwide. Here, we present chromosome-level haploid maps for two A …