[图书][B] Algorithms and theory of computation handbook, volume 2: special topics and techniques

MJ Atallah, M Blanton - 2009 - books.google.com
This handbook provides an up-to-date compendium of fundamental computer science
topics, techniques, and applications. Along with updating and revising many of the existing …

Watson–Crick palindromes in DNA computing

L Kari, K Mahalingam - Natural Computing, 2010 - Springer
This paper provides an overview of existing approaches to encoding information on DNA
strands for biocomputing, with a focus on the notion of Watson–Crick (WK) palindromes. We …

Involutively bordered words

L Kari, K Mahalingam - International Journal of Foundations of …, 2007 - World Scientific
In this paper we study a generalization of the classical notions of bordered and unbordered
words, motivated by DNA computing. DNA strands can be viewed as finite strings over the …

DNA codes and their properties

L Kari, K Mahalingam - International Workshop on DNA-Based Computers, 2006 - Springer
One of the main research topics in DNA computing is associated with the design of
information encoding single or double stranded DNA strands that are “suitable” for …

The syntactic monoid of hairpin-free languages

L Kari, K Mahalingam, G Thierrin - Acta Informatica, 2007 - Springer
The study of hairpin-free words has been initiated in the context of DNA computing. DNA
strands that, theoretically speaking, are finite strings over the alphabet {A, G, C, T} are used …

Effective heuristic methods for DNA strand design

DC Tulpan - 2006 - open.library.ubc.ca
Sets of DNA strands that satisfy combinatorial and thermodynamic properties play an
important role in various approaches to biomolecular computations, nano structure design …

On pseudoknot-bordered words and their properties

L Kari, S Seki - Journal of Computer and System Sciences, 2009 - Elsevier
We study a generalization of the classical notions of bordered and unbordered words,
motivated by biomolecular computing. DNA strands can be viewed as finite strings over the …

On decidability and closure properties of language classes with respect to bio-operations

OH Ibarra - Natural Computing, 2016 - Springer
We present general results that are useful in showing closure and decidable properties of
large classes of languages with respect to biologically-inspired operations. We use these …

[图书][B] Involution codes: with application to DNA strand design

K Mahalingam - 2004 - search.proquest.com
The set of all sequences that are generated by a biomolecular protocol forms a language
over the four letter alphabet Δ={A, G, C, T}. This alphabet is associated with the natural …

Pseudo-inversion on formal languages

DJ Cho, YS Han, SD Kang, H Kim, SK Ko… - … , UCNC 2014, London …, 2014 - Springer
We consider the pseudo-inversion operation inspired by a biological event as a result of the
partial inversion. We define the pseudo-inversion of a string w= uxv to consist of all strings v …