Using clusterProfiler to characterize multiomics data
With the advent of multiomics, software capable of multidimensional enrichment analysis
has become increasingly crucial for uncovering gene set variations in biological processes …
has become increasingly crucial for uncovering gene set variations in biological processes …
Spatiotemporal omics for biology and medicine
The completion of the Human Genome Project has provided a foundational blueprint for
understanding human life. Nonetheless, understanding the intricate mechanisms through …
understanding human life. Nonetheless, understanding the intricate mechanisms through …
BANKSY unifies cell typing and tissue domain segmentation for scalable spatial omics data analysis
Spatial omics data are clustered to define both cell types and tissue domains. We present
Building Aggregates with a Neighborhood Kernel and Spatial Yardstick (BANKSY), an …
Building Aggregates with a Neighborhood Kernel and Spatial Yardstick (BANKSY), an …
Benchmarking spatial clustering methods with spatially resolved transcriptomics data
Spatial clustering, which shares an analogy with single-cell clustering, has expanded the
scope of tissue physiology studies from cell-centroid to structure-centroid with spatially …
scope of tissue physiology studies from cell-centroid to structure-centroid with spatially …
Custom microfluidic chip design enables cost-effective three-dimensional spatiotemporal transcriptomics with a wide field of view
Spatial transcriptomic techniques offer unprecedented insights into the molecular
organization of complex tissues. However, integrating cost-effectiveness, high throughput, a …
organization of complex tissues. However, integrating cost-effectiveness, high throughput, a …
Streamlining spatial omics data analysis with Pysodb
Advances in spatial omics technologies have improved the understanding of cellular
organization in tissues, leading to the generation of complex and heterogeneous data and …
organization in tissues, leading to the generation of complex and heterogeneous data and …
Cross-species single-cell spatial transcriptomic atlases of the cerebellar cortex
The molecular and cellular organization of the primate cerebellum remains poorly
characterized. We obtained single-cell spatial transcriptomic atlases of macaque, marmoset …
characterized. We obtained single-cell spatial transcriptomic atlases of macaque, marmoset …
Repurposing large-format microarrays for scalable spatial transcriptomics
D Cipurko, T Ueda, L Mei, N Chevrier - Nature Methods, 2024 - nature.com
Spatiomolecular analyses are key to study tissue functions and malfunctions. However, we
lack profiling tools for spatial transcriptomics that are easy to adopt, low cost and scalable in …
lack profiling tools for spatial transcriptomics that are easy to adopt, low cost and scalable in …
Lost in space: what single-cell RNA sequencing cannot tell you
Plant scientists are rapidly integrating single-cell RNA sequencing (scRNA-seq) into their
workflows. Maximizing the potential of scRNA-seq requires a proper understanding of the …
workflows. Maximizing the potential of scRNA-seq requires a proper understanding of the …
Axo-axonic synaptic input drives homeostatic plasticity by tuning the axon initial segment structurally and functionally
R Zhao, B Ren, Y Xiao, J Tian, Y Zou, J Wei, Y Qi… - Science …, 2024 - science.org
Homeostatic plasticity maintains the stability of functional brain networks. The axon initial
segment (AIS), where action potentials start, undergoes dynamic adjustment to exert …
segment (AIS), where action potentials start, undergoes dynamic adjustment to exert …