Optical tweezers analysis of DNA–protein complexes

I Heller, TP Hoekstra, GA King, EJG Peterman… - Chemical …, 2014 - ACS Publications
Cellular DNA is continuously engaged in a molecular dance with many accessory proteins.
These proteins are responsible for orchestrating the storage, maintenance, and transfer of …

Structure and function of archaeal histones

B Henneman, C Van Emmerik, T Brouwer… - Biophysical …, 2018 - cell.com
The genomes of all organisms throughout the tree of life are compacted and organized in
chromatin by association of chromatin proteins. Eukaryotic genomes encode histones, which …

ALBA proteins confer thermotolerance through stabilizing HSF messenger RNAs in cytoplasmic granules

J Tong, Z Ren, L Sun, S Zhou, W Yuan, Y Hui, D Ci… - Nature Plants, 2022 - nature.com
High temperature is one of the major environmental stresses affecting plant growth and
fitness. Heat stress transcription factors (HSFs) play critical roles in regulating the expression …

Sliding sleeves of XRCC4–XLF bridge DNA and connect fragments of broken DNA

I Brouwer, G Sitters, A Candelli, SJ Heerema, I Heller… - Nature, 2016 - nature.com
Non-homologous end joining (NHEJ) is the primary pathway for repairing DNA double-
strand breaks (DSBs) in mammalian cells. Such breaks are formed, for example, during …

Mechanism of environmentally driven conformational changes that modulate H-NS DNA-bridging activity

RA van der Valk, J Vreede, L Qin, GF Moolenaar… - Elife, 2017 - elifesciences.org
Bacteria frequently need to adapt to altered environmental conditions. Adaptation requires
changes in gene expression, often mediated by global regulators of transcription. The …

The interplay between nucleoid organization and transcription in archaeal genomes

E Peeters, RPC Driessen, F Werner… - Nature Reviews …, 2015 - nature.com
The archaeal genome is organized by either eukaryotic-like histone proteins or bacterial-like
nucleoid-associated proteins. Recent studies have revealed novel insights into chromatin …

Lysine acetylation of the Mycobacterium tuberculosis HU protein modulates its DNA binding and genome organization

S Ghosh, B Padmanabhan, C Anand… - Molecular …, 2016 - Wiley Online Library
Nucleoid‐associated protein HU, a conserved protein across eubacteria is necessary for
maintaining the nucleoid organization and global regulation of gene expression …

The B. subtilis Rok protein is an atypical H-NS-like protein irresponsive to physico-chemical cues

AM Erkelens, L Qin, B van Erp… - Nucleic Acids …, 2022 - academic.oup.com
Nucleoid-associated proteins (NAPs) play a central role in chromosome organization and
environment-responsive transcription regulation. The Bacillus subtilis-encoded NAP Rok …

Prespacer processing and specific integration in a Type IA CRISPR system

C Rollie, S Graham, C Rouillon… - Nucleic acids …, 2018 - academic.oup.com
The CRISPR–Cas system for prokaryotic adaptive immunity provides RNA-mediated
protection from viruses and mobile genetic elements. Adaptation is dependent on the Cas1 …

The biology of thermoacidophilic archaea from the order Sulfolobales

AM Lewis, A Recalde, C Bräsen… - FEMS Microbiology …, 2021 - academic.oup.com
Thermoacidophilic archaea belonging to the order Sulfolobales thrive in extreme biotopes,
such as sulfuric hot springs and ore deposits. These microorganisms have been model …