[HTML][HTML] WormBase ParaSite− a comprehensive resource for helminth genomics
The number of publicly available parasitic worm genome sequences has increased
dramatically in the past three years, and research interest in helminth functional genomics is …
dramatically in the past three years, and research interest in helminth functional genomics is …
TCF/LEFs and Wnt signaling in the nucleus
KM Cadigan, ML Waterman - Cold Spring Harbor …, 2012 - cshperspectives.cshlp.org
T-cell factor/lymphoid enhancer factor (TCF/LEF) transcription factors are the major end
point mediators of Wnt/Wingless signaling throughout metazoans. TCF/LEFs are …
point mediators of Wnt/Wingless signaling throughout metazoans. TCF/LEFs are …
Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads—a baiting and iterative mapping approach
We present an in silico approach for the reconstruction of complete mitochondrial genomes
of non-model organisms directly from next-generation sequencing (NGS) data …
of non-model organisms directly from next-generation sequencing (NGS) data …
Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition)1
DJ Klionsky, AK Abdel-Aziz, S Abdelfatah, M Abdellatif… - autophagy, 2021 - Taylor & Francis
In 2008, we published the first set of guidelines for standardizing research in autophagy.
Since then, this topic has received increasing attention, and many scientists have entered …
Since then, this topic has received increasing attention, and many scientists have entered …
[HTML][HTML] MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects
Second-generation sequencing technologies are precipitating major shifts with regards to
what kinds of genomes are being sequenced and how they are annotated. While the first …
what kinds of genomes are being sequenced and how they are annotated. While the first …
[HTML][HTML] The genomes of four tapeworm species reveal adaptations to parasitism
Tapeworms (Cestoda) cause neglected diseases that can be fatal and are difficult to treat,
owing to inefficient drugs. Here we present an analysis of tapeworm genome sequences …
owing to inefficient drugs. Here we present an analysis of tapeworm genome sequences …
Artemis: an integrated platform for visualization and analysis of high-throughput sequence-based experimental data
Motivation: High-throughput sequencing (HTS) technologies have made low-cost
sequencing of large numbers of samples commonplace. An explosion in the type, not just …
sequencing of large numbers of samples commonplace. An explosion in the type, not just …
[HTML][HTML] Sequencing of the sea lamprey (Petromyzon marinus) genome provides insights into vertebrate evolution
Lampreys are representatives of an ancient vertebrate lineage that diverged from our own∼
500 million years ago. By virtue of this deeply shared ancestry, the sea lamprey (P. marinus) …
500 million years ago. By virtue of this deeply shared ancestry, the sea lamprey (P. marinus) …
[HTML][HTML] Insights into bilaterian evolution from three spiralian genomes
Current genomic perspectives on animal diversity neglect two prominent phyla, the molluscs
and annelids, that together account for nearly one-third of known marine species and are …
and annelids, that together account for nearly one-third of known marine species and are …
[HTML][HTML] Whole genome analysis of a schistosomiasis-transmitting freshwater snail
Biomphalaria snails are instrumental in transmission of the human blood fluke Schistosoma
mansoni. With the World Health Organization's goal to eliminate schistosomiasis as a global …
mansoni. With the World Health Organization's goal to eliminate schistosomiasis as a global …