Diversity in Genetic In Vivo Methods for Protein-Protein Interaction Studies: from the Yeast Two-Hybrid System to the Mammalian Split-Luciferase System

B Stynen, H Tournu, J Tavernier… - … and molecular biology …, 2012 - Am Soc Microbiol
The yeast two-hybrid system pioneered the field of in vivo protein-protein interaction
methods and undisputedly gave rise to a palette of ingenious techniques that are constantly …

Nature-inspired chemical engineering for process intensification

MO Coppens - Annual Review of Chemical and Biomolecular …, 2021 - annualreviews.org
A nature-inspired solution (NIS) methodology is proposed as a systematic platform for
innovation and to inform transformative technology required to address Grand Challenges …

The binary protein-protein interaction landscape of Escherichia coli

SV Rajagopala, P Sikorski, A Kumar, R Mosca… - Nature …, 2014 - nature.com
Efforts to map the Escherichia coli interactome have identified several hundred
macromolecular complexes, but direct binary protein-protein interactions (PPIs) have not …

Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins

P Hu, SC Janga, M Babu, JJ Díaz-Mejía, G Butland… - PLoS …, 2009 - journals.plos.org
One-third of the 4,225 protein-coding genes of Escherichia coli K-12 remain functionally
unannotated (orphans). Many map to distant clades such as Archaea, suggesting …

Treponema pallidum genome sequencing from six continents reveals variability in vaccine candidate genes and dominance of Nichols clade strains in Madagascar

NAP Lieberman, MJ Lin, H Xie, L Shrestha… - PLoS neglected …, 2021 - journals.plos.org
In spite of its immutable susceptibility to penicillin, Treponema pallidum (T. pallidum) subsp.
pallidum continues to cause millions of cases of syphilis each year worldwide, resulting in …

Model criticism based on likelihood-free inference, with an application to protein network evolution

O Ratmann, C Andrieu, C Wiuf… - Proceedings of the …, 2009 - National Acad Sciences
Mathematical models are an important tool to explain and comprehend complex
phenomena, and unparalleled computational advances enable us to easily explore them …

Whole Genome Sequences of Three Treponema pallidum ssp. pertenue Strains: Yaws and Syphilis Treponemes Differ in Less than 0.2% of the Genome Sequence

D Čejková, M Zobanikova, L Chen… - PLoS neglected …, 2012 - journals.plos.org
Background The yaws treponemes, Treponema pallidum ssp. pertenue (TPE) strains, are
closely related to syphilis causing strains of Treponema pallidum ssp. pallidum (TPA). Both …

[HTML][HTML] Genetic diversity in Treponema pallidum: implications for pathogenesis, evolution and molecular diagnostics of syphilis and yaws

D Šmajs, SJ Norris, GM Weinstock - Infection, Genetics and Evolution, 2012 - Elsevier
Pathogenic uncultivable treponemes, similar to syphilis-causing Treponema pallidum
subspecies pallidum, include T. pallidum ssp. pertenue, T. pallidum ssp. endemicum and …

Bacterial protein networks: properties and functions

A Typas, V Sourjik - Nature Reviews Microbiology, 2015 - nature.com
Distinct cellular functions are executed by separate groups of proteins, organized into
complexes or functional modules, which are ultimately interconnected in cell-wide protein …

Network representations of immune system complexity

N Subramanian, P Torabi‐Parizi… - … Systems Biology and …, 2015 - Wiley Online Library
The mammalian immune system is a dynamic multiscale system composed of a
hierarchically organized set of molecular, cellular, and organismal networks that act in …