QM/MM methods for biomolecular systems
HM Senn, W Thiel - Angewandte Chemie International Edition, 2009 - Wiley Online Library
Two are better than one: Quantum mechanics/molecular mechanics (QM/MM) methods are
the state‐of‐the‐art computational technique for treating reactive and other “electronic” …
the state‐of‐the‐art computational technique for treating reactive and other “electronic” …
Local electric fields: from enzyme catalysis to synthetic catalyst design
This Mini-Review Article outlines recent advances in the study of local electric field (LEF)
governed enzyme catalysis and the application of the LEF principle in synthetic catalyst …
governed enzyme catalysis and the application of the LEF principle in synthetic catalyst …
Exploring the Dependence of QM/MM Calculations of Enzyme Catalysis on the Size of the QM Region
G Jindal, A Warshel - The Journal of Physical Chemistry B, 2016 - ACS Publications
Although QM/MM calculations are the primary current tool for modeling enzymatic reactions,
the reliability of such calculations can be limited by the size of the QM region. Thus, we …
the reliability of such calculations can be limited by the size of the QM region. Thus, we …
Sarcosine as a potential prostate cancer biomarker—A review
Prostate cancer (CaP) is the most common type of tumour disease in men. Early diagnosis of
cancer of the prostate is very important, because the sooner the cancer is detected, the …
cancer of the prostate is very important, because the sooner the cancer is detected, the …
Conservation and functional importance of carbon–oxygen hydrogen bonding in AdoMet-dependent methyltransferases
S Horowitz, LMA Dirk, JD Yesselman… - Journal of the …, 2013 - ACS Publications
S-Adenosylmethionine (AdoMet)-based methylation is integral to metabolism and signaling.
AdoMet-dependent methyltransferases belong to multiple distinct classes and share a …
AdoMet-dependent methyltransferases belong to multiple distinct classes and share a …
Methyltransferases do not work by compression, cratic, or desolvation effects, but by electrostatic preorganization
J Lameira, RP Bora, ZT Chu… - … : Structure, Function, and …, 2015 - Wiley Online Library
The enzyme catechol O‐methyltransferase (COMT) catalyzes the transfer of a methyl group
from S‐adenosylmethionine to dopamine and related catechols. The search for the origin of …
from S‐adenosylmethionine to dopamine and related catechols. The search for the origin of …
Insights on the Origin of Catalysis on Glycine N-Methyltransferase from Computational Modeling
The origin of enzyme catalysis remains a question of debate despite much intense study. We
report a QM/MM theoretical study of the SN2 methyl transfer reaction catalyzed by a glycine …
report a QM/MM theoretical study of the SN2 methyl transfer reaction catalyzed by a glycine …
QM/MM‐Methoden für biomolekulare Systeme
HM Senn, W Thiel - Angewandte Chemie, 2009 - Wiley Online Library
Quantenmechanische/molekülmechanische (QM/MM‐) Verfahren sind die Methode der
Wahl für die theoretische Behandlung reaktiver oder anderer elektronischer Prozesse in …
Wahl für die theoretische Behandlung reaktiver oder anderer elektronischer Prozesse in …
High‐throughput computational investigation of protein electrostatics and cavity for SAM‐dependent methyltransferases
C Jurich, ZJ Yang - Protein Science, 2023 - Wiley Online Library
Abstract S‐adenosyl methionine (SAM)–dependent methyl transferases (MTases) are a
ubiquitous class of enzymes catalyzing dozens of essential life processes. Despite targeting …
ubiquitous class of enzymes catalyzing dozens of essential life processes. Despite targeting …
Structure and Reaction Mechanism of Phosphoethanolamine Methyltransferase from the Malaria Parasite Plasmodium falciparum: AN ANTIPARASITIC DRUG …
In the malarial parasite Plasmodium falciparum, a multifunctional phosphoethanolamine
methyltransferase (PfPMT) catalyzes the methylation of phosphoethanolamine (pEA) to …
methyltransferase (PfPMT) catalyzes the methylation of phosphoethanolamine (pEA) to …