A survey of current work in biomedical text mining

AM Cohen, WR Hersh - Briefings in bioinformatics, 2005 - academic.oup.com
The volume of published biomedical research, and therefore the underlying biomedical
knowledge base, is expanding at an increasing rate. Among the tools that can aid …

Status of text-mining techniques applied to biomedical text

RAA Erhardt, R Schneider, C Blaschke - Drug discovery today, 2006 - Elsevier
Scientific progress is increasingly based on knowledge and information. Knowledge is now
recognized as the driver of productivity and economic growth, leading to a new focus on the …

Dynamic network reconstruction from gene expression data applied to immune response during bacterial infection

R Guthke, U Möller, M Hoffmann, F Thies… - …, 2005 - academic.oup.com
Motivation: The immune response to bacterial infection represents a complex network of
dynamic gene and protein interactions. We present an optimized reverse engineering …

[HTML][HTML] Extracting interactions between proteins from the literature

D Zhou, Y He - Journal of biomedical informatics, 2008 - Elsevier
During the last decade, biomedicine has witnessed a tremendous development. Large
amounts of experimental and computational biomedical data have been generated along …

CoPub Mapper: mining MEDLINE based on search term co-publication

BTF Alako, A Veldhoven, S van Baal, R Jelier… - BMC …, 2005 - Springer
Background High throughput microarray analyses result in many differentially expressed
genes that are potentially responsible for the biological process of interest. In order to …

Message logging in mobile computing

B Yao, KF Ssu, WK Fuchs - Digest of Papers. Twenty-Ninth …, 1999 - ieeexplore.ieee.org
Dependable mobile computing is enhanced by independent recovery, low power
consumption and no dependence on stable storage at the mobile host. Existing recovery …

Quantitative assessment of dictionary-based protein named entity tagging

H Liu, ZZ Hu, M Torii, C Wu… - Journal of the American …, 2006 - academic.oup.com
Objective: Natural language processing (NLP) approaches have been explored to manage
and mine information recorded in biological literature. A critical step for biological literature …

Disease causality extraction based on lexical semantics and document-clause frequency from biomedical literature

D Lee, H Shin - BMC medical informatics and decision making, 2017 - Springer
Background Recently, research on human disease network has succeeded and has
become an aid in figuring out the relationship between various diseases. In most disease …

[HTML][HTML] Clinical information behavior of rehabilitation therapists: a review of the research on occupational therapists, physical therapists, and speech-language …

LA Kloda, JC Bartlett - Journal of the Medical Library Association …, 2009 - ncbi.nlm.nih.gov
Objectives: The review sought to synthesize existing research relevant to rehabilitation
therapists' clinical information behavior and to identify gaps in evidence, particularly in …

[PDF][PDF] Intex: A syntactic role driven protein-protein interaction extractor for bio-medical text

ST Ahmed, D Chidambaram, H Davulcu… - Proceedings of the ACL …, 2005 - aclanthology.org
In this paper, we present a fully automated extraction system, named IntEx, to identify gene
and protein interactions in biomedical text. Our approach is based on first splitting complex …