Epigenetic regulation of human non-coding RNA gene transcription

M Morselli, G Dieci - Biochemical Society Transactions, 2022 - portlandpress.com
Recent investigations on the non-protein-coding transcriptome of human cells have
revealed previously hidden layers of gene regulation relying on regulatory non-protein …

Microfluidics for Profiling miRNA Biomarker Panels in AI-Assisted Cancer Diagnosis and Prognosis

S Muthamilselvan… - … in Cancer Research …, 2023 - journals.sagepub.com
Early detection of cancers and their precise subtyping are essential to patient stratification
and effective cancer management. Data-driven identification of expression biomarkers …

TarBase-v9. 0 extends experimentally supported miRNA–gene interactions to cell-types and virally encoded miRNAs

G Skoufos, P Kakoulidis, S Tastsoglou… - Nucleic Acids …, 2024 - academic.oup.com
TarBase is a reference database dedicated to produce, curate and deliver high quality
experimentally-supported microRNA (miRNA) targets on protein-coding transcripts. In its …

DIANA-microT 2023: including predicted targets of virally encoded miRNAs

S Tastsoglou, A Alexiou, D Karagkouni… - Nucleic acids …, 2023 - academic.oup.com
DIANA-microT-CDS is a state-of-the-art miRNA target prediction algorithm catering the
scientific community since 2009. It is one of the first algorithms to predict miRNA binding …

MicroRNA-22-3p ameliorates Alzheimer's disease by targeting SOX9 through the NF-κB signaling pathway in the hippocampus

P Xia, J Chen, Y Liu, X Cui, C Wang, S Zong… - Journal of …, 2022 - Springer
Background Studies have suggested that many down-regulated miRNAs identified in the
brain tissue or serum of Alzheimer's disease (AD) patients were involved in the formation of …

Alternative polyadenylation determines the functional landscape of inverted Alu repeats

J Ku, K Lee, D Ku, S Kim, J Lee, H Bang, N Kim, H Do… - Molecular Cell, 2024 - cell.com
Summary Inverted Alu repeats (IRAlus) are abundantly found in the transcriptome,
especially in introns and 3′ untranslated regions (UTRs). Yet, the biological significance of …

isomiRdb: microRNA expression at isoform resolution

E Aparicio-Puerta, P Hirsch, GP Schmartz… - Nucleic Acids …, 2023 - academic.oup.com
A significant fraction of mature miRNA transcripts carries sequence and/or length variations,
termed isomiRs. IsomiRs are differentially abundant in cell types, tissues, body fluids or …

miRNATissueAtlas 2025: an update to the uniformly processed and annotated human and mouse non-coding RNA tissue atlas

S Rishik, P Hirsch, F Grandke… - Nucleic Acids …, 2024 - academic.oup.com
MiRNAs represent a non-coding RNA class that regulate gene expression and pathways.
While miRNAs are evolutionary conserved most data stems from Homo sapiens and Mus …

Transcription readthrough is prevalent in healthy human tissues and associated with inherent genomic features

P Caldas, M Luz, S Baseggio, R Andrade… - Communications …, 2024 - nature.com
Transcription termination is a crucial step in the production of conforming mRNAs and
functional proteins. Under cellular stress conditions, the transcription machinery fails to …

Association of miR-144 levels in the peripheral blood with COVID-19 severity and mortality

A Madè, S Greco, M Vausort, M Miliotis, E Schordan… - Scientific Reports, 2022 - nature.com
Abstract Coronavirus disease-2019 (COVID-19) can be asymptomatic or lead to a wide
symptom spectrum, including multi-organ damage and death. Here, we explored the …