The links between the gut microbiome and non-alcoholic fatty liver disease (NAFLD)

Z Safari, P Gérard - Cellular and Molecular Life Sciences, 2019 - Springer
NAFLD is currently the main cause of chronic liver disease in developed countries, and the
number of NAFLD patients is growing worldwide. NAFLD often has similar symptoms to …

[HTML][HTML] Role of the normal gut microbiota

SM Jandhyala, R Talukdar… - World journal of …, 2015 - ncbi.nlm.nih.gov
Relation between the gut microbiota and human health is being increasingly recognised. It
is now well established that a healthy gut flora is largely responsible for overall health of the …

[HTML][HTML] RASTtk: a modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes

T Brettin, JJ Davis, T Disz, RA Edwards, S Gerdes… - Scientific reports, 2015 - nature.com
Abstract The RAST (Rapid Annotation using Subsystem Technology) annotation engine was
built in 2008 to annotate bacterial and archaeal genomes. It works by offering a standard …

[HTML][HTML] Co-occurrence of resistance genes to antibiotics, biocides and metals reveals novel insights into their co-selection potential

C Pal, J Bengtsson-Palme, E Kristiansson… - BMC genomics, 2015 - Springer
Background Antibacterial biocides and metals can co-select for antibiotic resistance when
bacteria harbour resistance or tolerance genes towards both types of compounds. Despite …

The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)

R Overbeek, R Olson, GD Pusch, GJ Olsen… - Nucleic acids …, 2014 - academic.oup.com
Abstract In 2004, the SEED (http://pubseed. theseed. org/) was created to provide consistent
and accurate genome annotations across thousands of genomes and as a platform for …

[HTML][HTML] Genomic insights into the Ixodes scapularis tick vector of Lyme disease

M Gulia-Nuss, AB Nuss, JM Meyer… - Nature …, 2016 - nature.com
Ticks transmit more pathogens to humans and animals than any other arthropod. We
describe the 2.1 Gbp nuclear genome of the tick, Ixodes scapularis (Say), which vectors …

[HTML][HTML] Structure, function and diversity of the healthy human microbiome

nature, 2012 - nature.com
Studies of the human microbiome have revealed that even healthy individuals differ
remarkably in the microbes that occupy habitats such as the gut, skin and vagina. Much of …

Compositional and functional features of the gastrointestinal microbiome and their effects on human health

EB Hollister, C Gao, J Versalovic - Gastroenterology, 2014 - Elsevier
The human gastrointestinal tract contains distinct microbial communities that differ in
composition and function based on their location, as well as age, sex, race/ethnicity, and diet …

[HTML][HTML] Sargasso Sea Vibrio bacteria: Underexplored potential pathovars in a perturbed habitat

TJ Mincer, RP Bos, ER Zettler, S Zhao, AA Asbun… - Water Research, 2023 - Elsevier
We fully sequenced the genomes of 16 Vibrio cultivars isolated from eel larvae, plastic
marine debris (PMD), the pelagic brown macroalga Sargassum, and seawater samples …

BRENDA in 2017: new perspectives and new tools in BRENDA

S Placzek, I Schomburg, A Chang, L Jeske… - Nucleic acids …, 2016 - academic.oup.com
The BRENDA enzyme database (www. brenda-enzymes. org) has developed into the main
enzyme and enzyme-ligand information system in its 30 years of existence. The information …