A critical review of bottom-up proteomics: the good, the bad, and the future of this field
EJ Dupree, M Jayathirtha, H Yorkey, M Mihasan… - Proteomes, 2020 - mdpi.com
Proteomics is the field of study that includes the analysis of proteins, from either a basic
science prospective or a clinical one. Proteins can be investigated for their abundance …
science prospective or a clinical one. Proteins can be investigated for their abundance …
Scorpion venom as a source of antimicrobial peptides: overview of biomolecule separation, analysis and characterization methods
Scorpion venoms have long captivated scientific researchers, primarily due to the potency
and specificity of the mechanism of action of their derived components. Among other …
and specificity of the mechanism of action of their derived components. Among other …
Pyteomics 4.0: five years of development of a python proteomics framework
Many of the novel ideas that drive today's proteomic technologies are focused essentially on
experimental or data-processing workflows. The latter are implemented and published in a …
experimental or data-processing workflows. The latter are implemented and published in a …
[HTML][HTML] In-depth metaproteomics analysis of oral microbiome for lung cancer
The human oral microbiome correlates with numerous diseases, including lung cancer.
Identifying the functional changes by metaproteomics helps understand the disease-related …
Identifying the functional changes by metaproteomics helps understand the disease-related …
Molecular pathophysiology of diabetes mellitus during pregnancy with antenatal complications
AT Kopylov, O Papysheva, I Gribova, G Kotaysch… - Scientific Reports, 2020 - nature.com
Gestational diabetes mellitus is a daunting problem accompanied by severe fetal
development complications and type 2 diabetes mellitus in postpartum. Diagnosis of …
development complications and type 2 diabetes mellitus in postpartum. Diagnosis of …
Mass Spectrometry Acquisition and Fractionation Recommendations for TMT11 and TMT16 Labeled Samples
RM Riley, GL Negri, SWG Cheng… - Journal of Proteome …, 2024 - ACS Publications
Proteome coverage and accurate protein quantification are both important for evaluating
biological systems; however, compromises between quantification, coverage, and mass …
biological systems; however, compromises between quantification, coverage, and mass …
Bioinformatics in Russia: history and present-day landscape
MA Nawaz, IE Pamirsky… - Briefings in …, 2024 - academic.oup.com
Bioinformatics has become an interdisciplinary subject due to its universal role in molecular
biology research. The current status of Russia's bioinformatics research in Russia is not …
biology research. The current status of Russia's bioinformatics research in Russia is not …
A prostate cancer proteomics database for SWATH-MS based protein quantification
A Muazzam, D Chiasserini, J Kelsall, N Geifman… - Cancers, 2021 - mdpi.com
Simple Summary Prostate cancer is the third most frequent cancer in men worldwide, with a
notable increase in prevalence over the past two decades. The PSA is the only well …
notable increase in prevalence over the past two decades. The PSA is the only well …
Development of a high-pH reversed-phase well plate for peptide fractionation and deep proteome analysis of cells and exosomes
YC Liu, YT Huang, CJ Chen - Analytical and Bioanalytical Chemistry, 2022 - Springer
The complexity of the proteome often limits the number of identified proteins in the nanoflow
LC-MS (nanoLC-MS) analysis of samples. Therefore, peptide fractionation is essential for …
LC-MS (nanoLC-MS) analysis of samples. Therefore, peptide fractionation is essential for …
Differential lysis approach enables selective extraction of taxon-specific proteins for gut metaproteomics
Changes in microbiome composition and function have been linked to human health and
diseases. Metaproteomics provides invaluable functional information on the state of a …
diseases. Metaproteomics provides invaluable functional information on the state of a …