Protein design: From the aspect of water solubility and stability

R Qing, S Hao, E Smorodina, D Jin, A Zalevsky… - Chemical …, 2022 - ACS Publications
Water solubility and structural stability are key merits for proteins defined by the primary
sequence and 3D-conformation. Their manipulation represents important aspects of the …

Current state and recent advances in biopharmaceutical production in Escherichia coli, yeasts and mammalian cells

A Berlec, B Štrukelj - Journal of industrial microbiology and …, 2013 - academic.oup.com
Almost all of the 200 or so approved biopharmaceuticals have been produced in one of
three host systems: the bacterium Escherichia coli, yeasts (Saccharomyces cerevisiae …

DeepSol: a deep learning framework for sequence-based protein solubility prediction

S Khurana, R Rawi, K Kunji, GY Chuang… - …, 2018 - academic.oup.com
Motivation Protein solubility plays a vital role in pharmaceutical research and production
yield. For a given protein, the extent of its solubility can represent the quality of its function …

SOLpro: accurate sequence-based prediction of protein solubility

CN Magnan, A Randall, P Baldi - Bioinformatics, 2009 - academic.oup.com
Motivation: Protein insolubility is a major obstacle for many experimental studies. A
sequence-based prediction method able to accurately predict the propensity of a protein to …

Genome-based identification and comparative analysis of enzymes for carotenoid biosynthesis in microalgae

PK Narang, J Dey, SR Mahapatra, R Roy… - World Journal of …, 2022 - Springer
Microalgae are potential feedstocks for the commercial production of carotenoids, however,
the metabolic pathways for carotenoid biosynthesis across algal lineage are largely …

Protein quality in bacterial inclusion bodies

S Ventura, A Villaverde - TRENDS in Biotechnology, 2006 - cell.com
A common limitation of recombinant protein production in bacteria is the formation of
insoluble protein aggregates known as inclusion bodies. The propensity of a given protein to …

Amino acid contribution to protein solubility: Asp, Glu, and Ser contribute more favorably than the other hydrophilic amino acids in RNase Sa

SR Trevino, JM Scholtz, CN Pace - Journal of molecular biology, 2007 - Elsevier
Poor protein solubility is a common problem in high-resolution structural studies, formulation
of protein pharmaceuticals, and biochemical characterization of proteins. One popular …

DSResSol: A sequence-based solubility predictor created with Dilated Squeeze Excitation Residual Networks

M Madani, K Lin, A Tarakanova - International Journal of Molecular …, 2021 - mdpi.com
Protein solubility is an important thermodynamic parameter that is critical for the
characterization of a protein's function, and a key determinant for the production yield of a …

Rare codon content affects the solubility of recombinant proteins in a codon bias-adjusted Escherichia coli strain

GL Rosano, EA Ceccarelli - Microbial cell factories, 2009 - Springer
Background The expression of heterologous proteins in Escherichia coli is strongly affected
by codon bias. This phenomenon occurs when the codon usage of the mRNA coding for the …

Measuring and increasing protein solubility

SR Trevino, JM Scholtz, CN Pace - Journal of pharmaceutical sciences, 2008 - Elsevier
High concentration protein delivery is difficult to achieve for several protein pharmaceuticals
due to low solubility. In this review, we discuss different types of low protein solubility …