[HTML][HTML] The human virome: assembly, composition and host interactions
G Liang, FD Bushman - Nature Reviews Microbiology, 2021 - nature.com
The human body hosts vast microbial communities, termed the microbiome. Less well
known is the fact that the human body also hosts vast numbers of different viruses …
known is the fact that the human body also hosts vast numbers of different viruses …
Best practices for analysing microbiomes
Complex microbial communities shape the dynamics of various environments, ranging from
the mammalian gastrointestinal tract to the soil. Advances in DNA sequencing technologies …
the mammalian gastrointestinal tract to the soil. Advances in DNA sequencing technologies …
[HTML][HTML] Emergence of methicillin resistance predates the clinical use of antibiotics
The discovery of antibiotics more than 80 years ago has led to considerable improvements
in human and animal health. Although antibiotic resistance in environmental bacteria is …
in human and animal health. Although antibiotic resistance in environmental bacteria is …
Pharokka: a fast scalable bacteriophage annotation tool
In recent years, there has been an increasing interest in bacteriophages, which has led to
growing numbers of bacteriophage genomic sequences becoming available. Consequently …
growing numbers of bacteriophage genomic sequences becoming available. Consequently …
[HTML][HTML] VirSorter2: a multi-classifier, expert-guided approach to detect diverse DNA and RNA viruses
Background Viruses are a significant player in many biosphere and human ecosystems, but
most signals remain “hidden” in metagenomic/metatranscriptomic sequence datasets due to …
most signals remain “hidden” in metagenomic/metatranscriptomic sequence datasets due to …
[HTML][HTML] Systematic discovery of recombinases for efficient integration of large DNA sequences into the human genome
Large serine recombinases (LSRs) are DNA integrases that facilitate the site-specific
integration of mobile genetic elements into bacterial genomes. Only a few LSRs, such as …
integration of mobile genetic elements into bacterial genomes. Only a few LSRs, such as …
Enterococcus peptidoglycan remodeling promotes checkpoint inhibitor cancer immunotherapy
The antitumor efficacy of cancer immunotherapy can correlate with the presence of certain
bacterial species within the gut microbiome. However, many of the molecular mechanisms …
bacterial species within the gut microbiome. However, many of the molecular mechanisms …
[HTML][HTML] Combination of pre-adapted bacteriophage therapy and antibiotics for treatment of fracture-related infection due to pandrug-resistant Klebsiella pneumoniae
A Eskenazi, C Lood, J Wubbolts, M Hites… - Nature …, 2022 - nature.com
A 30-year-old bombing victim with a fracture-related pandrug-resistant Klebsiella
pneumoniae infection after long-term (> 700 days) antibiotic therapy is treated with a pre …
pneumoniae infection after long-term (> 700 days) antibiotic therapy is treated with a pre …
[HTML][HTML] Direct activation of a bacterial innate immune system by a viral capsid protein
Bacteria have evolved diverse immunity mechanisms to protect themselves against the
constant onslaught of bacteriophages,–. Similar to how eukaryotic innate immune systems …
constant onslaught of bacteriophages,–. Similar to how eukaryotic innate immune systems …
[HTML][HTML] VIBRANT: automated recovery, annotation and curation of microbial viruses, and evaluation of viral community function from genomic sequences
K Kieft, Z Zhou, K Anantharaman - Microbiome, 2020 - Springer
Background Viruses are central to microbial community structure in all environments. The
ability to generate large metagenomic assemblies of mixed microbial and viral sequences …
ability to generate large metagenomic assemblies of mixed microbial and viral sequences …