Metal ion modeling using classical mechanics

P Li, KM Merz Jr - Chemical reviews, 2017 - ACS Publications
Metal ions play significant roles in numerous fields including chemistry, geochemistry,
biochemistry, and materials science. With computational tools increasingly becoming …

Thermally regenerative copper nanoslurry flow batteries for heat-to-power conversion with low-grade thermal energy

S Maye, HH Girault, P Peljo - Energy & Environmental Science, 2020 - pubs.rsc.org
Low-grade heat (below 200° C) is available in vast quantities from industry, or from standard
roof-top solar thermal collectors. However, the production of electric power from these heat …

Morphology and ion diffusion in PEDOT: Tos. A coarse grained molecular dynamics simulation

M Modarresi, JF Franco-Gonzalez… - Physical Chemistry …, 2018 - pubs.rsc.org
A Martini coarse-grained Molecular Dynamics (MD) model for the doped conducting polymer
poly (3, 4-ethylenedioxythiophene)(PEDOT) is developed. The morphology of PEDOT: Tos …

Development and Application of a Nonbonded Cu2+ Model That Includes the Jahn–Teller Effect

Q Liao, SCL Kamerlin, B Strodel - The Journal of Physical …, 2015 - ACS Publications
Metal ions are both ubiquitous to and crucial in biology. In classical simulations, they are
typically described as simple van der Waals spheres, making it difficult to provide reliable …

Water-Graphene non-bonded interaction parameters: Development and influence on molecular dynamics simulations

S Liao, Q Ke, Y Wei, L Li - Applied Surface Science, 2022 - Elsevier
Molecular dynamics simulations have been extensively used to study water-graphene
systems, and the force field parameters are vital for the accuracy of simulation results …

Solvation Structure of Zn2+ and Cu2+ Ions in Acetonitrile: A Combined EXAFS and XANES Study

P D'Angelo, V Migliorati - The Journal of Physical Chemistry B, 2015 - ACS Publications
The solvation structure of Zn2+ and Cu2+ in acetonitrile has been determined by a
combined approach using both X-ray absorption near edge structure (XANES) and the …

A new potential model for acetonitrile: Insight into the local structure organization

VA Koverga, OM Korsun, ON Kalugin… - Journal of Molecular …, 2017 - Elsevier
Thorough understanding of the microscopic organization and dynamics of individual
constituents is a crucial step in the description and the prediction the properties of electrolyte …

A three-dimensional model of human lysyl oxidase, a cross-linking enzyme

SD Vallet, M Guéroult, N Belloy, M Dauchez… - ACS …, 2019 - ACS Publications
Lysyl oxidase (LOX) is a cross-linking enzyme identified 50 years ago, but its 3D structure is
still unknown. We have thus built a 3D model of human LOX by homology modeling using …

Theoretical investigation of solvent and oxidation/deprotonation effects on the electronic structure of a mononuclear Ru-aqua-polypyridine complex in aqueous …

LR Franco, KCF Toledo, TA Matias… - Physical Chemistry …, 2023 - pubs.rsc.org
Mononuclear polypyridine ruthenium (Ru) complexes can catalyze various reactions,
including water splitting, and can also serve as photosensitizers in solar cells. Despite …

Estimation of transition-metal empirical parameters for molecular mechanical force fields

F Sebesta, V Sláma, J Melcr, Z Futera… - Journal of chemical …, 2016 - ACS Publications
Force-field parameters of the first row transition metals together with a few additional
common elements such as those from the second (Rh, Ru) and third (Hg, Pt) rows of …