Towards the fully automated monitoring of ecological communities
High‐resolution monitoring is fundamental to understand ecosystems dynamics in an era of
global change and biodiversity declines. While real‐time and automated monitoring of …
global change and biodiversity declines. While real‐time and automated monitoring of …
[HTML][HTML] Environmental DNA metabarcoding for benthic monitoring: A review of sediment sampling and DNA extraction methods
Environmental DNA (eDNA) metabarcoding (parallel sequencing of DNA/RNA for
identification of whole communities within a targeted group) is revolutionizing the field of …
identification of whole communities within a targeted group) is revolutionizing the field of …
Deep learning and computer vision will transform entomology
Most animal species on Earth are insects, and recent reports suggest that their abundance is
in drastic decline. Although these reports come from a wide range of insect taxa and regions …
in drastic decline. Although these reports come from a wide range of insect taxa and regions …
Environmental DNA: What's behind the term? Clarifying the terminology and recommendations for its future use in biomonitoring
J Pawlowski, L Apothéloz‐Perret‐Gentil… - Molecular …, 2020 - Wiley Online Library
The last decade brought a spectacular development of so‐called environmental (e) DNA
studies. In general,“environmental DNA” is defined as DNA isolated from environmental …
studies. In general,“environmental DNA” is defined as DNA isolated from environmental …
Machine learning applications in microbial ecology, human microbiome studies, and environmental monitoring
RB Ghannam, SM Techtmann - Computational and Structural …, 2021 - Elsevier
Advances in nucleic acid sequencing technology have enabled expansion of our ability to
profile microbial diversity. These large datasets of taxonomic and functional diversity are key …
profile microbial diversity. These large datasets of taxonomic and functional diversity are key …
Biases in bulk: DNA metabarcoding of marine communities and the methodology involved
LM van der Loos, R Nijland - Molecular Ecology, 2021 - Wiley Online Library
With the growing anthropogenic pressure on marine ecosystems, the need for efficient
monitoring of biodiversity grows stronger. DNA metabarcoding of bulk samples is …
monitoring of biodiversity grows stronger. DNA metabarcoding of bulk samples is …
Ecosystems monitoring powered by environmental genomics: a review of current strategies with an implementation roadmap
T Cordier, L Alonso‐Sáez… - Molecular …, 2021 - Wiley Online Library
A decade after environmental scientists integrated high‐throughput sequencing
technologies in their toolbox, the genomics‐based monitoring of anthropogenic impacts on …
technologies in their toolbox, the genomics‐based monitoring of anthropogenic impacts on …
Machine learning in marine ecology: an overview of techniques and applications
Abstract Machine learning covers a large set of algorithms that can be trained to identify
patterns in data. Thanks to the increase in the amount of data and computing power …
patterns in data. Thanks to the increase in the amount of data and computing power …
Embracing environmental genomics and machine learning for routine biomonitoring
Genomics is fast becoming a routine tool in medical diagnostics and cutting-edge
biotechnologies. Yet, its use for environmental biomonitoring is still considered a futuristic …
biotechnologies. Yet, its use for environmental biomonitoring is still considered a futuristic …
Improving metabarcoding taxonomic assignment: A case study of fishes in a large marine ecosystem
DNA metabarcoding is an important tool for molecular ecology. However, its effectiveness
hinges on the quality of reference sequence databases and classification parameters …
hinges on the quality of reference sequence databases and classification parameters …