Deep convolutional neural networks for brain image analysis on magnetic resonance imaging: a review

J Bernal, K Kushibar, DS Asfaw, S Valverde… - Artificial intelligence in …, 2019 - Elsevier
In recent years, deep convolutional neural networks (CNNs) have shown record-shattering
performance in a variety of computer vision problems, such as visual object recognition …

Boundary loss for highly unbalanced segmentation

H Kervadec, J Bouchtiba, C Desrosiers… - … on medical imaging …, 2019 - proceedings.mlr.press
Widely used loss functions for convolutional neural network (CNN) segmentation, eg, Dice
or cross-entropy, are based on integrals (summations) over the segmentation regions …

Tversky loss function for image segmentation using 3D fully convolutional deep networks

SSM Salehi, D Erdogmus, A Gholipour - International workshop on …, 2017 - Springer
Fully convolutional deep neural networks carry out excellent potential for fast and accurate
image segmentation. One of the main challenges in training these networks is data …

HyperDense-Net: a hyper-densely connected CNN for multi-modal image segmentation

J Dolz, K Gopinath, J Yuan, H Lombaert… - IEEE transactions on …, 2018 - ieeexplore.ieee.org
Recently, dense connections have attracted substantial attention in computer vision
because they facilitate gradient flow and implicit deep supervision during training …

Multiple sclerosis lesion analysis in brain magnetic resonance images: techniques and clinical applications

Y Ma, C Zhang, M Cabezas, Y Song… - IEEE Journal of …, 2022 - ieeexplore.ieee.org
Multiple sclerosis (MS) is a chronic inflammatory and degenerative disease of the central
nervous system, characterized by the appearance of focal lesions in the white and gray …

Standardized assessment of automatic segmentation of white matter hyperintensities and results of the WMH segmentation challenge

HJ Kuijf, JM Biesbroek, J De Bresser… - IEEE transactions on …, 2019 - ieeexplore.ieee.org
Quantification of cerebral white matter hyperintensities (WMH) of presumed vascular origin
is of key importance in many neurological research studies. Currently, measurements are …

QuickNAT: A fully convolutional network for quick and accurate segmentation of neuroanatomy

AG Roy, S Conjeti, N Navab, C Wachinger… - NeuroImage, 2019 - Elsevier
Whole brain segmentation from structural magnetic resonance imaging (MRI) is a
prerequisite for most morphological analyses, but is computationally intense and can …

Automatic segmentation of the spinal cord and intramedullary multiple sclerosis lesions with convolutional neural networks

C Gros, B De Leener, A Badji, J Maranzano, D Eden… - Neuroimage, 2019 - Elsevier
The spinal cord is frequently affected by atrophy and/or lesions in multiple sclerosis (MS)
patients. Segmentation of the spinal cord and lesions from MRI data provides measures of …

Auto-context convolutional neural network (auto-net) for brain extraction in magnetic resonance imaging

SSM Salehi, D Erdogmus… - IEEE transactions on …, 2017 - ieeexplore.ieee.org
Brain extraction or whole brain segmentation is an important first step in many of the
neuroimage analysis pipelines. The accuracy and the robustness of brain extraction …

[HTML][HTML] Uncovering convolutional neural network decisions for diagnosing multiple sclerosis on conventional MRI using layer-wise relevance propagation

F Eitel, E Soehler, J Bellmann-Strobl, AU Brandt… - NeuroImage: Clinical, 2019 - Elsevier
Abstract Machine learning-based imaging diagnostics has recently reached or even
surpassed the level of clinical experts in several clinical domains. However, classification …