Genome editing with CRISPR–Cas nucleases, base editors, transposases and prime editors

AV Anzalone, LW Koblan, DR Liu - Nature biotechnology, 2020 - nature.com
The development of new CRISPR–Cas genome editing tools continues to drive major
advances in the life sciences. Four classes of CRISPR–Cas-derived genome editing agents …

Bacterial insertion sequences: their genomic impact and diversity

P Siguier, E Gourbeyre… - FEMS microbiology …, 2014 - academic.oup.com
Insertion sequences (ISs), arguably the smallest and most numerous autonomous
transposable elements (TEs), are important players in shaping their host genomes. This …

Integrative and conjugative elements: mosaic mobile genetic elements enabling dynamic lateral gene flow

RAF Wozniak, MK Waldor - Nature Reviews Microbiology, 2010 - nature.com
Integrative and conjugative elements (ICEs) are a diverse group of mobile genetic elements
found in both Gram-positive and Gram-negative bacteria. These elements primarily reside in …

Biological diversity of prokaryotic type IV secretion systems

CE Alvarez-Martinez, PJ Christie - Microbiology and Molecular …, 2009 - Am Soc Microbiol
Type IV secretion systems (T4SS) translocate DNA and protein substrates across prokaryotic
cell envelopes generally by a mechanism requiring direct contact with a target cell. Three …

[HTML][HTML] Crystal structures of RNase H bound to an RNA/DNA hybrid: substrate specificity and metal-dependent catalysis

M Nowotny, SA Gaidamakov, RJ Crouch, W Yang - Cell, 2005 - cell.com
RNase H belongs to a nucleotidyl-transferase superfamily, which includes transposase,
retroviral integrase, Holliday junction resolvase, and RISC nuclease Argonaute. We report …

Everyman's guide to bacterial insertion sequences

P Siguier, E Gourbeyre, A Varani, B Ton-Hoang… - Mobile DNA …, 2015 - Wiley Online Library
We have divided this review into two major sections. In one, we have attempted to present
an overview of our current understanding of prokaryotic insertion sequences (IS), their …

Slicer and the argonautes

NH Tolia, L Joshua-Tor - Nature chemical biology, 2007 - nature.com
Though they started out as somewhat mysterious components of the RNAi effector
complexes, Argonaute proteins have since taken center stage in RNAi gene silencing. They …

Evolutionary genomics of the HAD superfamily: understanding the structural adaptations and catalytic diversity in a superfamily of phosphoesterases and allied …

AM Burroughs, KN Allen, D Dunaway-Mariano… - Journal of molecular …, 2006 - Elsevier
The HAD (haloacid dehalogenase) superfamily includes phosphoesterases, ATPases,
phosphonatases, dehalogenases, and sugar phosphomutases acting on a remarkably …

Mechanism and control of V (D) J recombination versus class switch recombination: similarities and differences

DD Dudley, J Chaudhuri, CH Bassing, FW Alt - Advances in immunology, 2005 - Elsevier
Abstract V (D) J recombination is the process by which the variable region exons encoding
the antigen recognition sites of receptors expressed on B and T lymphocytes are generated …

The outs and ins of transposition: from mu to kangaroo

MJ Curcio, KM Derbyshire - Nature Reviews Molecular Cell Biology, 2003 - nature.com
Transposons are ubiquitous in prokaryotic and eukaryotic organisms and are major
determinants of genome structure. Transposition—the movement of discrete segments of …