Rapid point of care diagnostic tests for viral and bacterial respiratory tract infections—needs, advances, and future prospects

A Zumla, JA Al-Tawfiq, VI Enne, M Kidd… - The Lancet Infectious …, 2014 - thelancet.com
Respiratory tract infections rank second as causes of adult and paediatric morbidity and
mortality worldwide. Respiratory tract infections are caused by many different bacteria …

[HTML][HTML] Next-generation sequencing technology in clinical virology

MR Capobianchi, E Giombini, G Rozera - Clinical Microbiology and …, 2013 - Elsevier
Recent advances in nucleic acid sequencing technologies, referred to as 'next-generation'
sequencing (NGS), have produced a true revolution and opened new perspectives for …

Emergence of a highly pathogenic avian influenza virus from a low-pathogenic progenitor

I Monne, A Fusaro, MI Nelson, L Bonfanti… - Journal of …, 2014 - Am Soc Microbiol
Avian influenza (AI) viruses of the H7 subtype have the potential to evolve into highly
pathogenic (HP) viruses that represent a major economic problem for the poultry industry …

[HTML][HTML] The use of next generation sequencing in the diagnosis and typing of respiratory infections

F Thorburn, S Bennett, S Modha, D Murdoch… - Journal of Clinical …, 2015 - Elsevier
Background Molecular assays are the gold standard methods used to diagnose viral
respiratory pathogens. Pitfalls associated with this technique include limits to the number of …

Deep sequencing analysis of viral infection and evolution allows rapid and detailed characterization of viral mutant spectrum

O Isakov, AV Bordería, D Golan, A Hamenahem… - …, 2015 - academic.oup.com
Motivation: The study of RNA virus populations is a challenging task. Each population of
RNA virus is composed of a collection of different, yet related genomes often referred to as …

An Investigation of Severe Influenza Cases in Russia during the 2022–2023 Epidemic Season and an Analysis of HA-D222G/N Polymorphism in Newly Emerged and …

NP Kolosova, ND Boldyrev, SV Svyatchenko… - Pathogens, 2023 - mdpi.com
In Russia, during the COVID-19 pandemic, a decrease in influenza circulation was initially
observed. Influenza circulation re-emerged with the dominance of new clades of A (H3N2) …

Evolution of Newcastle disease virus quasispecies diversity and enhanced virulence after passage through chicken air sacs

C Meng, X Qiu, S Yu, C Li, Y Sun, Z Chen, K Liu… - Journal of …, 2016 - Am Soc Microbiol
It has been reported that lentogenic Newcastle disease virus (NDV) isolates have the
potential to become velogenic after their transmission and circulation in chickens, but the …

A (H1N1) pdm09 HA D222 variants associated with severity and mortality in patients during a second wave in Mexico

JA Vazquez-Perez, P Isa, D Kobasa, CE Ormsby… - Virology journal, 2013 - Springer
Abstract Background Pandemic type A (H1N1) influenza arose in early 2009, probably in
Mexico and the United States, and reappeared in North America in September for seven …

A (H 1 N 1) pdm09 hemagglutinin D 222 G and D 222 N variants are frequently harbored by patients requiring extracorporeal membrane oxygenation and advanced …

T Ruggiero, F De Rosa, F Cerutti… - Influenza and other …, 2013 - Wiley Online Library
Background In patients with A (H 1 N 1) pdm09 infection, severe lung involvement requiring
admission to intensive care units (ICU) has been reported. Mutations at the hemagglutinin …

Severe cases of seasonal influenza in Russia in 2017-2018

NP Kolosova, TN Ilyicheva, AV Danilenko… - PLoS …, 2019 - journals.plos.org
The 2017–2018 influenza epidemic season in Russia was characterized by a relatively low
morbidity and mortality. We evaluated herd immunity prior to the 2017–2018 influenza …