Multi-atlas segmentation of biomedical images: a survey

JE Iglesias, MR Sabuncu - Medical image analysis, 2015 - Elsevier
Abstract Multi-atlas segmentation (MAS), first introduced and popularized by the pioneering
work of Rohlfing, et al.(2004), Klein, et al.(2005), and Heckemann, et al.(2006), is becoming …

[HTML][HTML] Network analysis of neuroimaging in mice

L Scharwächter, FJ Schmitt, N Pallast, GR Fink… - Neuroimage, 2022 - Elsevier
Graph theory allows assessing changes of neuronal connectivity and interactions of brain
regions in response to local lesions, eg, after stroke, and global perturbations, eg, due to …

Microbiota influence the development of the brain and behaviors in C57BL/6J mice

J Lu, S Synowiec, L Lu, Y Yu, T Bretherick, S Takada… - PloS one, 2018 - journals.plos.org
We investigated the contributions of commensal bacteria to brain structural maturation by
magnetic resonance imaging and behavioral tests in four and 12 weeks old C57BL/6J …

Mapping of CSF transport using high spatiotemporal resolution dynamic contrast‐enhanced MRI in mice: effect of anesthesia

EH Stanton, NDÅ Persson, RS Gomolka… - Magnetic …, 2021 - Wiley Online Library
Purpose Dynamic contrast‐enhanced MRI (DCE‐MRI) represents the only available
approach for glymphatic cerebrospinal fluid (CSF) flow 3D mapping in the brain of living …

[HTML][HTML] aMAP is a validated pipeline for registration and segmentation of high-resolution mouse brain data

CJ Niedworok, APY Brown, M Jorge Cardoso… - Nature …, 2016 - nature.com
The validation of automated image registration and segmentation is crucial for accurate and
reliable mapping of brain connectivity and function in three-dimensional (3D) data sets …

Volume measurements of individual muscles in human quadriceps femoris using atlas-based segmentation approaches

A Le Troter, A Fouré, M Guye, S Confort-Gouny… - … Resonance Materials in …, 2016 - Springer
Objectives Atlas-based segmentation is a powerful method for automatic structural
segmentation of several sub-structures in many organs. However, such an approach has …

Bone marrow drives central nervous system regeneration after radiation injury

J Dietrich, N Baryawno, N Nayyar… - The Journal of …, 2018 - Am Soc Clin Investig
Nervous system injury is a frequent result of cancer therapy involving cranial irradiation,
leaving patients with marked memory and other neurobehavioral disabilities. Here, we …

Validation of clinical acceptability of an atlas‐based segmentation algorithm for the delineation of organs at risk in head and neck cancer

AK Hoang Duc, G Eminowicz, R Mendes… - Medical …, 2015 - Wiley Online Library
Purpose: The aim of this study was to assess whether clinically acceptable segmentations of
organs at risk (OARs) in head and neck cancer can be obtained automatically and efficiently …

AAV5-miHTT-mediated huntingtin lowering improves brain health in a Huntington's disease mouse model

SB Thomson, A Stam, C Brouwers, V Fodale… - Brain, 2023 - academic.oup.com
Huntingtin (HTT)-lowering therapies show great promise in treating Huntington's disease.
We have developed a microRNA targeting human HTT that is delivered in an adeno …

Accelerating multipool CEST MRI of Parkinson's disease using deep learning–based Z‐spectral compressed sensing

L Chen, H Xu, T Gong, J Jin, L Lin… - Magnetic …, 2024 - Wiley Online Library
Purpose To develop a deep learning–based approach to reduce the scan time of multipool
CEST MRI for Parkinson's disease (PD) while maintaining sufficient prediction accuracy …