Reproducible, scalable, and shareable analysis pipelines with bioinformatics workflow managers
The rapid growth of high-throughput technologies has transformed biomedical research.
With the increasing amount and complexity of data, scalability and reproducibility have …
With the increasing amount and complexity of data, scalability and reproducibility have …
The machine learning life cycle and the cloud: implications for drug discovery
O Spjuth, J Frid, A Hellander - Expert opinion on drug discovery, 2021 - Taylor & Francis
Introduction: Artificial intelligence (AI) and machine learning (ML) are increasingly used in
many aspects of drug discovery. Larger data sizes and methods such as Deep Neural …
many aspects of drug discovery. Larger data sizes and methods such as Deep Neural …
[HTML][HTML] Sustainable data analysis with Snakemake
Data analysis often entails a multitude of heterogeneous steps, from the application of
various command line tools to the usage of scripting languages like R or Python for the …
various command line tools to the usage of scripting languages like R or Python for the …
Predicting blood–brain barrier permeability of molecules with a large language model and machine learning
ETC Huang, JS Yang, KYK Liao, WCW Tseng… - Scientific Reports, 2024 - nature.com
Predicting the blood–brain barrier (BBB) permeability of small-molecule compounds using a
novel artificial intelligence platform is necessary for drug discovery. Machine learning and a …
novel artificial intelligence platform is necessary for drug discovery. Machine learning and a …
KoopaML: a graphical platform for building machine learning pipelines adapted to health professionals
F García-Peñalvo, A Vázquez-Ingelmo… - 2024 - reunir.unir.net
Machine Learning (ML) has extended its use in several domains to support complex
analyses of data. The medical field, in which significant quantities of data are continuously …
analyses of data. The medical field, in which significant quantities of data are continuously …
MasterOfPores: a workflow for the analysis of oxford nanopore direct RNA sequencing datasets
The direct RNA sequencing platform offered by Oxford Nanopore Technologies allows for
direct measurement of RNA molecules without the need of conversion to complementary …
direct measurement of RNA molecules without the need of conversion to complementary …
[HTML][HTML] Cinco de Bio: A Low-Code Platform for Domain-Specific Workflows for Biomedical Imaging Research
Background: In biomedical imaging research, experimental biologists generate vast
amounts of data that require advanced computational analysis. Breakthroughs in …
amounts of data that require advanced computational analysis. Breakthroughs in …
KubeAdaptor: a docking framework for workflow containerization on Kubernetes
As Kubernetes becomes the infrastructure of the cloud-native era, the integration of workflow
systems with Kubernetes is gaining more and more popularity. However, when migrating the …
systems with Kubernetes is gaining more and more popularity. However, when migrating the …
Design considerations for workflow management systems use in production genomics research and the clinic
The changing landscape of genomics research and clinical practice has created a need for
computational pipelines capable of efficiently orchestrating complex analysis stages while …
computational pipelines capable of efficiently orchestrating complex analysis stages while …
Predicting off-target binding profiles with confidence using conformal prediction
Ligand-based models can be used in drug discovery to obtain an early indication of
potential off-target interactions that could be linked to adverse effects. Another application is …
potential off-target interactions that could be linked to adverse effects. Another application is …