An overview of current population genomics methods for the analysis of whole‐genome resequencing data in eukaryotes
YXC Bourgeois, BH Warren - Molecular Ecology, 2021 - Wiley Online Library
Characterizing the population history of a species and identifying loci underlying local
adaptation is crucial in functional ecology, evolutionary biology, conservation and …
adaptation is crucial in functional ecology, evolutionary biology, conservation and …
Efficient ancestry and mutation simulation with msprime 1.0
Stochastic simulation is a key tool in population genetics, since the models involved are
often analytically intractable and simulation is usually the only way of obtaining ground-truth …
often analytically intractable and simulation is usually the only way of obtaining ground-truth …
abc: an R package for approximate Bayesian computation (ABC)
Many recent statistical applications involve inference under complex models, where it is
computationally prohibitive to calculate likelihoods but possible to simulate data …
computationally prohibitive to calculate likelihoods but possible to simulate data …
Rabbit genome analysis reveals a polygenic basis for phenotypic change during domestication
The genetic changes underlying the initial steps of animal domestication are still poorly
understood. We generated a high-quality reference genome for the rabbit and compared it to …
understood. We generated a high-quality reference genome for the rabbit and compared it to …
[HTML][HTML] Sequencing of the genus Arabidopsis identifies a complex history of nonbifurcating speciation and abundant trans-specific polymorphism
PY Novikova, N Hohmann, V Nizhynska… - Nature …, 2016 - nature.com
The notion of species as reproductively isolated units related through a bifurcating tree
implies that gene trees should generally agree with the species tree and that sister taxa …
implies that gene trees should generally agree with the species tree and that sister taxa …
Deep diversification and long-term persistence in the South American 'dry diagonal': integrating continent-wide phylogeography and distribution modeling of geckos
The relative influence of Neogene geomorphological events and Quaternary climatic
changes as causal mechanisms on Neotropical diversification remains largely speculative …
changes as causal mechanisms on Neotropical diversification remains largely speculative …
An early divergence of KhoeSan ancestors from those of other modern humans is supported by an ABC-based analysis of autosomal resequencing data
Abstract Sub-Saharan Africa has consistently been shown to be the most genetically diverse
region in the world. Despite the fact that a substantial portion of this variation is partitioned …
region in the world. Despite the fact that a substantial portion of this variation is partitioned …
Demographic Inference Reveals African and European Admixture in the North American Drosophila melanogaster Population
P Duchen, D Živković, S Hutter, W Stephan… - Genetics, 2013 - academic.oup.com
Drosophila melanogaster spread from sub-Saharan Africa to the rest of the world colonizing
new environments. Here, we modeled the joint demography of African (Zimbabwe) …
new environments. Here, we modeled the joint demography of African (Zimbabwe) …
[HTML][HTML] The genomic landscape at a late stage of stickleback speciation: high genomic divergence interspersed by small localized regions of introgression
Speciation is a continuous process and analysis of species pairs at different stages of
divergence provides insight into how it unfolds. Previous genomic studies on young species …
divergence provides insight into how it unfolds. Previous genomic studies on young species …
[HTML][HTML] Demographic divergence history of pied flycatcher and collared flycatcher inferred from whole-genome re-sequencing data
K Nadachowska-Brzyska, R Burri, PI Olason… - PLoS …, 2013 - journals.plos.org
Profound knowledge of demographic history is a prerequisite for the understanding and
inference of processes involved in the evolution of population differentiation and speciation …
inference of processes involved in the evolution of population differentiation and speciation …