[HTML][HTML] A transcription factor atlas of directed differentiation

J Joung, S Ma, T Tay, KR Geiger-Schuller… - Cell, 2023 - cell.com
Transcription factors (TFs) regulate gene programs, thereby controlling diverse cellular
processes and cell states. To comprehensively understand TFs and the programs they …

Production of de novo cardiomyocytes: human pluripotent stem cell differentiation and direct reprogramming

PW Burridge, G Keller, JD Gold, JC Wu - Cell stem cell, 2012 - cell.com
Cardiovascular disease is a leading cause of death worldwide. The limited capability of
heart tissue to regenerate has prompted methodological developments for creating de novo …

Novel live alkaline phosphatase substrate for identification of pluripotent stem cells

U Singh, RH Quintanilla, S Grecian, KR Gee… - Stem Cell Reviews and …, 2012 - Springer
Alkaline phosphatases (AP) are a class of enzymes that hydrolyze phosphate containing
molecules under alkaline conditions. In humans, there are primarily four different types of …

Perspective: The promise of multi-cellular engineered living systems

RD Kamm, R Bashir, N Arora, RD Dar, MU Gillette… - APL …, 2018 - pubs.aip.org
Recent technological breakthroughs in our ability to derive and differentiate induced
pluripotent stem cells, organoid biology, organ-on-chip assays, and 3-D bioprinting have all …

[HTML][HTML] Alternative splicing: An important mechanism in stem cell biology

K Chen, X Dai, J Wu - World journal of stem cells, 2015 - ncbi.nlm.nih.gov
Alternative splicing (AS) is an essential mechanism in post-transcriptional regulation and
leads to protein diversity. It has been shown that AS is prevalent in metazoan genomes, and …

MBNL1 and RBFOX2 cooperate to establish a splicing programme involved in pluripotent stem cell differentiation

JP Venables, L Lapasset, G Gadea, P Fort… - Nature …, 2013 - nature.com
Reprogramming somatic cells into induced pluripotent stem cells (iPSCs) has provided huge
insight into the pathways, mechanisms and transcription factors that control differentiation …

Nanog-dependent feedback loops regulate murine embryonic stem cell heterogeneity

BD MacArthur, A Sevilla, M Lenz, FJ Müller… - Nature cell …, 2012 - nature.com
A number of key regulators of mouse embryonic stem (ES) cell identity, including the
transcription factor Nanog, show strong expression fluctuations at the single-cell level. The …

Female naïve human pluripotent stem cells carry X chromosomes with Xa-like and Xi-like folding conformations

B Patterson, B Yang, Y Tanaka, KY Kim, B Cakir… - Science …, 2023 - science.org
Three-dimensional (3D) genomics shows immense promise for studying X chromosome
inactivation (XCI) by interrogating changes to the X chromosomes' 3D states. Here, we …

MicroRNA-302 switch to identify and eliminate undifferentiated human pluripotent stem cells

CJC Parr, S Katayama, K Miki, Y Kuang, Y Yoshida… - Scientific reports, 2016 - nature.com
The efficiency of pluripotent stem cell differentiation is highly variable, often resulting in
heterogeneous populations that contain undifferentiated cells. Here we developed a …

Temporal analysis of genome alterations induced by single-cell passaging in human embryonic stem cells

Q Bai, JM Ramirez, F Becker, V Pantesco… - Stem cells and …, 2015 - liebertpub.com
Simplified culture conditions are essential for large-scale drug screening and medical
applications of human pluripotent stem cells (hPSCs). However, hPSCs [ie, human …