[HTML][HTML] A single-cell atlas of entorhinal cortex from individuals with Alzheimer's disease reveals cell-type-specific gene expression regulation
There is currently little information available about how individual cell types contribute to
Alzheimer's disease. Here we applied single-nucleus RNA sequencing to entorhinal cortex …
Alzheimer's disease. Here we applied single-nucleus RNA sequencing to entorhinal cortex …
[HTML][HTML] Network-based approaches for modeling disease regulation and progression
Molecular interaction networks lay the foundation for studying how biological functions are
controlled by the complex interplay of genes and proteins. Investigating perturbed processes …
controlled by the complex interplay of genes and proteins. Investigating perturbed processes …
Single-cell transcriptomics of regulatory T cells reveals trajectories of tissue adaptation
Non-lymphoid tissues (NLTs) harbor a pool of adaptive immune cells with largely
unexplored phenotype and development. We used single-cell RNA-seq to characterize …
unexplored phenotype and development. We used single-cell RNA-seq to characterize …
[HTML][HTML] Differential gene regulatory networks in development and disease
Gene regulatory networks, in which differential expression of regulator genes induce
differential expression of their target genes, underlie diverse biological processes such as …
differential expression of their target genes, underlie diverse biological processes such as …
[HTML][HTML] Altered mycobiota signatures and enriched pathogenic Aspergillus rambellii are associated with colorectal cancer based on multicohort fecal metagenomic …
Background & Aims The enteric mycobiota is a major component of the human gut
microbiota, but its role in colorectal cancer (CRC) remains largely elusive. We conducted a …
microbiota, but its role in colorectal cancer (CRC) remains largely elusive. We conducted a …
Single-nucleus RNA-seq identifies Huntington disease astrocyte states
O Al-Dalahmah, AA Sosunov, A Shaik, K Ofori… - Acta neuropathologica …, 2020 - Springer
Huntington Disease (HD) is an inherited movement disorder caused by expanded CAG
repeats in the Huntingtin gene. We have used single nucleus RNASeq (snRNASeq) to …
repeats in the Huntingtin gene. We have used single nucleus RNASeq (snRNASeq) to …
Commensal microbiota modulate gene expression in the skin
JS Meisel, G Sfyroera, C Bartow-McKenney, C Gimblet… - Microbiome, 2018 - Springer
Background The skin harbors complex communities of resident microorganisms, yet little is
known of their physiological roles and the molecular mechanisms that mediate cutaneous …
known of their physiological roles and the molecular mechanisms that mediate cutaneous …
Immune checkpoint blockade sensitivity and progression-free survival associates with baseline CD8+ T cell clone size and cytotoxicity
RA Watson, O Tong, R Cooper, CA Taylor… - Science …, 2021 - science.org
The antitumor action of immune checkpoint blockade (ICB) is primarily mediated by CD8+ T
cells. How sensitivity to ICB varies across CD8+ T cell subsets and clonotypes and the …
cells. How sensitivity to ICB varies across CD8+ T cell subsets and clonotypes and the …
[HTML][HTML] C. difficile exploits a host metabolite produced during toxin-mediated disease
KM Pruss, JL Sonnenburg - Nature, 2021 - nature.com
Several enteric pathogens can gain specific metabolic advantages over other members of
the microbiota by inducing host pathology and inflammation. The pathogen Clostridium …
the microbiota by inducing host pathology and inflammation. The pathogen Clostridium …
Systematic profiling of the chicken gut microbiome reveals dietary supplementation with antibiotics alters expression of multiple microbial pathways with minimal …
A Zou, K Nadeau, X Xiong, PW Wang, JK Copeland… - Microbiome, 2022 - Springer
Background The emergence of antimicrobial resistance is a major threat to global health
and has placed pressure on the livestock industry to eliminate the use of antibiotic growth …
and has placed pressure on the livestock industry to eliminate the use of antibiotic growth …