Advantages and challenges of metagenomic sequencing for the diagnosis of pulmonary infectious diseases

Y Chen, LC Fan, YH Chai, JF Xu - The clinical respiratory …, 2022 - Wiley Online Library
Objective We aim to familiarize the application status of metagenomic sequencing in
diagnosing pulmonary infections, to compare metagenomic sequencing with traditional …

Family Genomoviridae: 2021 taxonomy update

A Varsani, M Krupovic - Archives of virology, 2021 - Springer
Abstract The family Genomoviridae (phylum Cressdnaviricota, class Repensiviricetes, order
Geplafuvirales) includes viruses with circular single-stranded DNA genomes encoding two …

A remarkably diverse and well-organized virus community in a filter-feeding oyster

JZ Jiang, YF Fang, HY Wei, P Zhu, M Liu, WG Yuan… - Microbiome, 2023 - Springer
Background Viruses play critical roles in the marine environment because of their
interactions with an extremely broad range of potential hosts. Many studies of viruses in …

HIV-1 infection alters the viral composition of plasma in men who have sex with men

K Liu, Y Li, R Xu, Y Zhang, C Zheng, Z Wan, H Li… - Msphere, 2021 - Am Soc Microbiol
Altered gut virome and expanded abundance of certain viruses were found in HIV-1-infected
individuals. It remains largely unknown how plasma virus composition changes during HIV-1 …

Detection of Torquetenovirus and Redondovirus DNA in saliva samples from SARS-CoV-2-positive and-negative subjects

PG Spezia, A Baj, F Drago Ferrante, S Boutahar, L Azzi… - Viruses, 2022 - mdpi.com
Objectives: Torquetenovirus (TTV) and Redondovirus (ReDoV) are the most prevalent
viruses found in the human respiratory virome in viral metagenomics studies. A large-scale …

Plasma Virome reveals blooms and transmission of Anellovirus in intravenous drug users with HIV-1, HCV, and/or HBV infections

Y Li, L Cao, M Ye, R Xu, X Chen, Y Ma… - Microbiology …, 2022 - Am Soc Microbiol
Intravenous drug users (IDUs) are a high-risk group for HIV-1, hepatitis C virus (HCV), and
hepatitis B virus (HBV) infections, which are the leading causes of death in IDUs. However …

Gemykibivirus detection in acute encephalitis patients from Nepal

ET Tuladhar, S Shrestha, S Vernon, L Droit… - Msphere, 2024 - journals.asm.org
Acute encephalitis syndrome (AES) causes significant morbidity and mortality worldwide. In
Nepal, Japanese encephalitis virus (JEV) accounts for~ 5-20% of AES cases, but~ 75% of …

Concentration, pathogenic composition, and exposure risks of bioaerosol in large indoor public environments: A comparative study of urban and suburban areas

J Ni, S Huang, Z Liang, Z Chen, S Zhang, G Li… - Science of The Total …, 2024 - Elsevier
Biological contamination in larger indoor environments can lead to the outbreak of various
infectious diseases. This study aimed to compare the pollution profiles and associated …

Unbiased virus detection in a Danish zoo using a portable metagenomic sequencing system

AS Fomsgaard, SA Tahas, K Spiess, C Polacek… - Viruses, 2023 - mdpi.com
Metagenomic next-generation sequencing (mNGS) is receiving increased attention for the
detection of new viruses and infections occurring at the human–animal interface. The ability …

Molecular characterization of plasma virome of hepatocellular carcinoma (HCC) patients

N Ullah Khan, A Sadiq, J Khan, N Basharat, ZU Hassan… - AMB Express, 2024 - Springer
Hepatocellular carcinoma (HCC) stands as the most common cancer type, arising from
various causes, and responsible for a substantial number of cancer-related fatalities. Recent …