The next generation of CRISPR–Cas technologies and applications

A Pickar-Oliver, CA Gersbach - Nature reviews Molecular cell biology, 2019 - nature.com
The prokaryote-derived CRISPR–Cas genome editing systems have transformed our ability
to manipulate, detect, image and annotate specific DNA and RNA sequences in living cells …

Context is everything: aneuploidy in cancer

U Ben-David, A Amon - Nature Reviews Genetics, 2020 - nature.com
Cancer is driven by multiple types of genetic alterations, which range in size from point
mutations to whole-chromosome gains and losses, known as aneuploidy. Chromosome …

3D genomics across the tree of life reveals condensin II as a determinant of architecture type

C Hoencamp, O Dudchenko, AMO Elbatsh… - Science, 2021 - science.org
We investigated genome folding across the eukaryotic tree of life. We find two types of three-
dimensional (3D) genome architectures at the chromosome scale. Each type appears and …

EagleC: A deep-learning framework for detecting a full range of structural variations from bulk and single-cell contact maps

X Wang, Y Luan, F Yue - Science Advances, 2022 - science.org
The Hi-C technique has been shown to be a promising method to detect structural variations
(SVs) in human genomes. However, algorithms that can use Hi-C data for a full-range SV …

Accurate classification of BRCA1 variants with saturation genome editing

GM Findlay, RM Daza, B Martin, MD Zhang, AP Leith… - Nature, 2018 - nature.com
Variants of uncertain significance fundamentally limit the clinical utility of genetic information.
The challenge they pose is epitomized by BRCA1, a tumour suppressor gene in which …

Massively multiplex single-cell Hi-C

V Ramani, X Deng, R Qiu, KL Gunderson… - Nature …, 2017 - nature.com
We present single-cell combinatorial indexed Hi-C (sciHi-C), a method that applies
combinatorial cellular indexing to chromosome conformation capture. In this proof of …

Efficient genome editing in filamentous fungus Trichoderma reesei using the CRISPR/Cas9 system

R Liu, L Chen, Y Jiang, Z Zhou, G Zou - Cell Discovery, 2015 - nature.com
Filamentous fungi have wide applications in biotechnology. The CRISPR/Cas9 system is a
powerful genome-editing method that facilitates genetic alterations of genomes in a variety …

Applications of the CRISPR–Cas9 system in cancer biology

FJ Sánchez-Rivera, T Jacks - Nature reviews cancer, 2015 - nature.com
The prokaryotic type II CRISPR–Cas9 (clustered regularly interspaced short palindromic
repeats–CRISPR-associated 9) system is rapidly revolutionizing the field of genetic …

Glioblastoma mutations alter EGFR dimer structure to prevent ligand bias

C Hu, CA Leche, A Kiyatkin, Z Yu, SE Stayrook… - Nature, 2022 - nature.com
The epidermal growth factor receptor (EGFR) is frequently mutated in human cancer,, and is
an important therapeutic target. EGFR inhibitors have been successful in lung cancer, where …

Applications of CRISPR–Cas systems in neuroscience

M Heidenreich, F Zhang - Nature Reviews Neuroscience, 2016 - nature.com
Genome-editing tools, and in particular those based on CRISPR–Cas (clustered regularly
interspaced short palindromic repeat (CRISPR)–CRISPR-associated protein) systems, are …