[HTML][HTML] Smart breeding driven by big data, artificial intelligence, and integrated genomic-enviromic prediction

Y Xu, X Zhang, H Li, H Zheng, J Zhang, MS Olsen… - Molecular Plant, 2022 - cell.com
The first paradigm of plant breeding involves direct selection-based phenotypic observation,
followed by predictive breeding using statistical models for quantitative traits constructed …

[HTML][HTML] A review of deep learning applications for genomic selection

OA Montesinos-López, A Montesinos-López… - BMC genomics, 2021 - Springer
Abstract Background Several conventional genomic Bayesian (or no Bayesian) prediction
methods have been proposed including the standard additive genetic effect model for which …

[HTML][HTML] LightGBM: accelerated genomically designed crop breeding through ensemble learning

J Yan, Y Xu, Q Cheng, S Jiang, Q Wang, Y Xiao, C Ma… - Genome biology, 2021 - Springer
LightGBM is an ensemble model of decision trees for classification and regression
prediction. We demonstrate its utility in genomic selection-assisted breeding with a large …

Machine learning bridges omics sciences and plant breeding

J Yan, X Wang - Trends in Plant Science, 2023 - cell.com
Some of the biological knowledge obtained from fundamental research will be implemented
in applied plant breeding. To bridge basic research and breeding practice, machine learning …

[HTML][HTML] Machine learning in plant science and plant breeding

ADJ van Dijk, G Kootstra, W Kruijer, D de Ridder - Iscience, 2021 - cell.com
Technological developments have revolutionized measurements on plant genotypes and
phenotypes, leading to routine production of large, complex data sets. This has led to …

[HTML][HTML] Harnessing crop wild diversity for climate change adaptation

AJ Cortés, F López-Hernández - Genes, 2021 - mdpi.com
Warming and drought are reducing global crop production with a potential to substantially
worsen global malnutrition. As with the green revolution in the last century, plant genetics …

Advancing artificial intelligence to help feed the world

BJ Hayes, C Chen, O Powell, E Dinglasan… - Nature …, 2023 - nature.com
Artificial intelligence (AI) has ena-bled recent step changes in some fields, most notably in
predicting three-dimensional structures of proteins and producing generative text on diverse …

Crop breeding for a changing climate: Integrating phenomics and genomics with bioinformatics

JI Marsh, H Hu, M Gill, J Batley, D Edwards - Theoretical and Applied …, 2021 - Springer
Key message Safeguarding crop yields in a changing climate requires bioinformatics
advances in harnessing data from vast phenomics and genomics datasets to translate …

[HTML][HTML] Exploring deep learning for complex trait genomic prediction in polyploid outcrossing species

LM Zingaretti, SA Gezan, LFV Ferrão… - Frontiers in plant …, 2020 - frontiersin.org
Genomic prediction (GP) is the procedure whereby the genetic merits of untested candidates
are predicted using genome wide marker information. Although numerous examples of GP …

Reviewing methods of deep learning for intelligent healthcare systems in genomics and biomedicine

I Zafar, S Anwar, W Yousaf, FU Nisa, T Kausar… - … Signal Processing and …, 2023 - Elsevier
The advancements in genomics and biomedical technologies have generated vast amounts
of biological and physiological data, which present opportunities for understanding human …