[HTML][HTML] Machine learning in chemoinformatics and drug discovery

YC Lo, SE Rensi, W Torng, RB Altman - Drug discovery today, 2018 - Elsevier
Highlights•Chemical graph theory and descriptors in drug discovery.•Chemical fingerprint
and similarity analysis.•Machine learning models for virtual screening.•Future challenges …

The necessary nitrogen atom: a versatile high-impact design element for multiparameter optimization

LD Pennington, DT Moustakas - Journal of Medicinal Chemistry, 2017 - ACS Publications
There is a continued desire in biomedical research to reduce the number and duration of
design cycles required to optimize lead compounds into high-quality chemical probes or …

Lead‐oriented synthesis: a new opportunity for synthetic chemistry

A Nadin, C Hattotuwagama… - Angewandte Chemie …, 2012 - Wiley Online Library
The pharmaceutical industry remains solely reliant on synthetic chemistry methodology to
prepare compounds for small‐molecule drug discovery programmes. The importance of the …

Predicting cell-penetrating peptides using machine learning algorithms and navigating in their chemical space

ECL de Oliveira, K Santana, L Josino… - Scientific reports, 2021 - nature.com
Cell-penetrating peptides (CPPs) are naturally able to cross the lipid bilayer membrane that
protects cells. These peptides share common structural and physicochemical properties and …

Machine learning approaches and their applications in drug discovery and design

S Priya, G Tripathi, DB Singh, P Jain… - Chemical Biology & …, 2022 - Wiley Online Library
This review is focused on several machine learning approaches used in chemoinformatics.
Machine learning approaches provide tools and algorithms to improve drug discovery. Many …

ARF6 is an actionable node that orchestrates oncogenic GNAQ signaling in uveal melanoma

JH Yoo, DS Shi, AH Grossmann, LK Sorensen… - Cancer cell, 2016 - cell.com
Activating mutations in Gαq proteins, which form the α subunit of certain heterotrimeric G
proteins, drive uveal melanoma oncogenesis by triggering multiple downstream signaling …

A close-up look at the chemical space of commercially available building blocks for medicinal chemistry

Y Zabolotna, DM Volochnyuk… - Journal of chemical …, 2021 - ACS Publications
The ability to efficiently synthesize desired compounds can be a limiting factor for chemical
space exploration in drug discovery. This ability is conditioned not only by the existence of …

The exposure data landscape for manufactured chemicals

PP Egeghy, R Judson, S Gangwal, S Mosher… - Science of the Total …, 2012 - Elsevier
The US Environmental Protection Agency is developing chemical screening and
prioritization programs to evaluate environmental chemicals for potential risk to human …

Dark chemical matter as a promising starting point for drug lead discovery

AM Wassermann, E Lounkine, D Hoepfner… - Nature chemical …, 2015 - nature.com
High-throughput screening (HTS) is an integral part of early drug discovery. Herein, we
focused on those small molecules in a screening collection that have never shown …

Chemical library space: definition and DNA-encoded library comparison study case

R Pikalyova, Y Zabolotna, D Horvath… - Journal of Chemical …, 2023 - ACS Publications
The development of DNA-encoded library (DEL) technology introduced new challenges for
the analysis of chemical libraries. It is often useful to consider a chemical library as a stand …