[HTML][HTML] Machine learning in chemoinformatics and drug discovery
Highlights•Chemical graph theory and descriptors in drug discovery.•Chemical fingerprint
and similarity analysis.•Machine learning models for virtual screening.•Future challenges …
and similarity analysis.•Machine learning models for virtual screening.•Future challenges …
The necessary nitrogen atom: a versatile high-impact design element for multiparameter optimization
LD Pennington, DT Moustakas - Journal of Medicinal Chemistry, 2017 - ACS Publications
There is a continued desire in biomedical research to reduce the number and duration of
design cycles required to optimize lead compounds into high-quality chemical probes or …
design cycles required to optimize lead compounds into high-quality chemical probes or …
Lead‐oriented synthesis: a new opportunity for synthetic chemistry
A Nadin, C Hattotuwagama… - Angewandte Chemie …, 2012 - Wiley Online Library
The pharmaceutical industry remains solely reliant on synthetic chemistry methodology to
prepare compounds for small‐molecule drug discovery programmes. The importance of the …
prepare compounds for small‐molecule drug discovery programmes. The importance of the …
Predicting cell-penetrating peptides using machine learning algorithms and navigating in their chemical space
ECL de Oliveira, K Santana, L Josino… - Scientific reports, 2021 - nature.com
Cell-penetrating peptides (CPPs) are naturally able to cross the lipid bilayer membrane that
protects cells. These peptides share common structural and physicochemical properties and …
protects cells. These peptides share common structural and physicochemical properties and …
Machine learning approaches and their applications in drug discovery and design
S Priya, G Tripathi, DB Singh, P Jain… - Chemical Biology & …, 2022 - Wiley Online Library
This review is focused on several machine learning approaches used in chemoinformatics.
Machine learning approaches provide tools and algorithms to improve drug discovery. Many …
Machine learning approaches provide tools and algorithms to improve drug discovery. Many …
ARF6 is an actionable node that orchestrates oncogenic GNAQ signaling in uveal melanoma
JH Yoo, DS Shi, AH Grossmann, LK Sorensen… - Cancer cell, 2016 - cell.com
Activating mutations in Gαq proteins, which form the α subunit of certain heterotrimeric G
proteins, drive uveal melanoma oncogenesis by triggering multiple downstream signaling …
proteins, drive uveal melanoma oncogenesis by triggering multiple downstream signaling …
A close-up look at the chemical space of commercially available building blocks for medicinal chemistry
Y Zabolotna, DM Volochnyuk… - Journal of chemical …, 2021 - ACS Publications
The ability to efficiently synthesize desired compounds can be a limiting factor for chemical
space exploration in drug discovery. This ability is conditioned not only by the existence of …
space exploration in drug discovery. This ability is conditioned not only by the existence of …
The exposure data landscape for manufactured chemicals
The US Environmental Protection Agency is developing chemical screening and
prioritization programs to evaluate environmental chemicals for potential risk to human …
prioritization programs to evaluate environmental chemicals for potential risk to human …
Dark chemical matter as a promising starting point for drug lead discovery
High-throughput screening (HTS) is an integral part of early drug discovery. Herein, we
focused on those small molecules in a screening collection that have never shown …
focused on those small molecules in a screening collection that have never shown …
Chemical library space: definition and DNA-encoded library comparison study case
R Pikalyova, Y Zabolotna, D Horvath… - Journal of Chemical …, 2023 - ACS Publications
The development of DNA-encoded library (DEL) technology introduced new challenges for
the analysis of chemical libraries. It is often useful to consider a chemical library as a stand …
the analysis of chemical libraries. It is often useful to consider a chemical library as a stand …