Elucidating the cellular determinants of targeted membrane protein degradation by lysosome-targeting chimeras
Targeted protein degradation can provide advantages over inhibition approaches in the
development of therapeutic strategies. Lysosome-targeting chimeras (LYTACs) harness …
development of therapeutic strategies. Lysosome-targeting chimeras (LYTACs) harness …
[HTML][HTML] Generalized precursor prediction boosts identification rates and accuracy in mass spectrometry based proteomics
Data independent acquisition mass spectrometry (DIA-MS) has recently emerged as an
important method for the identification of blood-based biomarkers. However, the large …
important method for the identification of blood-based biomarkers. However, the large …
[HTML][HTML] MS-based proteomics of body fluids: the end of the beginning
JM Bader, V Albrecht, M Mann - Molecular & Cellular Proteomics, 2023 - ASBMB
Accurate biomarkers are a crucial and necessary precondition for precision medicine, yet
existing ones are often unspecific and new ones have been very slow to enter the clinic …
existing ones are often unspecific and new ones have been very slow to enter the clinic …
Evaluation of DDA Library-Free Strategies for Phosphoproteomics and Ubiquitinomics Data-Independent Acquisition Data
C Wen, X Wu, G Lin, W Yan, G Gan, X Xu… - Journal of Proteome …, 2023 - ACS Publications
Phosphoproteomics and ubiquitinomics data-independent acquisition (DIA) mass
spectrometry (MS) data is typically analyzed by using a data-dependent acquisition (DDA) …
spectrometry (MS) data is typically analyzed by using a data-dependent acquisition (DDA) …
QuantUMS: uncertainty minimisation enables confident quantification in proteomics
F Kistner, JL Grossmann, LR Sinn, V Demichev - BioRxiv, 2023 - biorxiv.org
Mass spectrometry-based proteomics has been rapidly gaining traction as a powerful
analytical method both in basic research and translation. While the problem of error control …
analytical method both in basic research and translation. While the problem of error control …
[HTML][HTML] The fitness cost of spurious phosphorylation
The fidelity of signal transduction requires the binding of regulatory molecules to their
cognate targets. However, the crowded cell interior risks off-target interactions between …
cognate targets. However, the crowded cell interior risks off-target interactions between …
[HTML][HTML] A Cosine-Similarity-Based Deconvolution Method for Analyzing Data-Independent Acquisition Mass Spectrometry Data
X Zhang, R Wu, Z Qu - Applied Sciences, 2023 - mdpi.com
Although data-independent acquisition (DIA) has the ability to identify and quantify all
peptides in a sample, highly complex mixed mass spectra present difficulties for accurate …
peptides in a sample, highly complex mixed mass spectra present difficulties for accurate …
[HTML][HTML] Pan-Cancer Proteomics Analysis to Identify Tumor-Enriched and Highly Expressed Cell Surface Antigens as Potential Targets for Cancer Therapeutics
J Wang, W Yu, R D'Anna, A Przybyla, M Wilson… - Molecular & Cellular …, 2023 - ASBMB
Abstract The National Cancer Institute's Clinical Proteomic Tumor Analysis Consortium
(CPTAC) provides unique opportunities for cancer target discovery using protein expression …
(CPTAC) provides unique opportunities for cancer target discovery using protein expression …
Using high throughput technologies to understand heterogeneous drug response
GE Boyle - 2023 - search.proquest.com
Heterogeneity is an inherent quality of biological systems, and is one of the properties that
facilitates adaptation of organisms to new environments and stimuli. However, the scientific …
facilitates adaptation of organisms to new environments and stimuli. However, the scientific …