[HTML][HTML] Aquatic environmental DNA: A review of the macro-organismal biomonitoring revolution

M Takahashi, M Saccò, JH Kestel, G Nester… - Science of the Total …, 2023 - Elsevier
Environmental DNA (eDNA) is the fastest growing biomonitoring tool fuelled by two key
features: time efficiency and sensitivity. Technological advancements allow rapid …

Who is eating what: diet assessment using next generation sequencing

F Pompanon, BE Deagle, WOC Symondson… - Molecular …, 2012 - Wiley Online Library
The analysis of food webs and their dynamics facilitates understanding of the mechanistic
processes behind community ecology and ecosystem functions. Having accurate techniques …

Combined use of eDNA metabarcoding and video surveillance for the assessment of fish biodiversity

M Stat, J John, JD DiBattista, SJ Newman… - Conservation …, 2019 - Wiley Online Library
Monitoring communities of fish is important for the management and sustainability of
fisheries and marine ecosystems. Baited remote underwater video systems (BRUVs) are …

DNA metabarcoding in diet studies: Unveiling ecological aspects in aquatic and terrestrial ecosystems

LL de Sousa, SM Silva, R Xavier - Environmental DNA, 2019 - Wiley Online Library
Effective conservation of species and ecosystems requires the understanding of important
ecological traits, such as dietary habits, food webs, and trophic niches. In diet studies, the …

Methodological trends and perspectives of animal dietary studies by noninvasive fecal DNA metabarcoding

H Ando, H Mukai, T Komura, T Dewi… - Environmental …, 2020 - Wiley Online Library
Fine‐scale estimation of trophic interactions is an important subject in the field of ecology.
Diet analysis based on fecal DNA metabarcoding has been accepted as a noninvasive …

[HTML][HTML] Passive eDNA collection enhances aquatic biodiversity analysis

C Bessey, S Neil Jarman, T Simpson, H Miller… - Communications …, 2021 - nature.com
Environmental DNA (eDNA) metabarcoding is a sensitive and widely used approach for
species detection and biodiversity assessment. The most common eDNA collection method …

Minimizing polymerase biases in metabarcoding

RV Nichols, C Vollmers, LA Newsom… - Molecular ecology …, 2018 - Wiley Online Library
DNA metabarcoding is an increasingly popular method to characterize and quantify
biodiversity in environmental samples. Metabarcoding approaches simultaneously amplify a …

eDNA metabarcoding survey reveals fine‐scale coral reef community variation across a remote, tropical island ecosystem

KM West, M Stat, ES Harvey, CL Skepper… - Molecular …, 2020 - Wiley Online Library
Environmental DNA (eDNA) metabarcoding, a technique for retrieving multispecies DNA
from environmental samples, can detect a diverse array of marine species from filtered …

DNA barcoding for ecologists

A Valentini, F Pompanon, P Taberlet - Trends in ecology & evolution, 2009 - cell.com
DNA barcoding–taxon identification using a standardized DNA region–has received much
attention recently, and is being further developed through an international initiative. We …

Taxon‐specific PCR for DNA barcoding arthropod prey in bat faeces

MRK Zeale, RK Butlin, GLA Barker… - Molecular ecology …, 2011 - Wiley Online Library
The application of DNA barcoding to dietary studies allows prey taxa to be identified in the
absence of morphological evidence and permits a greater resolution of prey identity than is …