The CRISPR tool kit for genome editing and beyond
M Adli - Nature communications, 2018 - nature.com
CRISPR is becoming an indispensable tool in biological research. Once known as the
bacterial immune system against invading viruses, the programmable capacity of the Cas9 …
bacterial immune system against invading viruses, the programmable capacity of the Cas9 …
H3K9me3-dependent heterochromatin: barrier to cell fate changes
Establishing and maintaining cell identity depends on the proper regulation of gene
expression, as specified by transcription factors and reinforced by epigenetic mechanisms …
expression, as specified by transcription factors and reinforced by epigenetic mechanisms …
An enhanced CRISPR repressor for targeted mammalian gene regulation
The RNA-guided endonuclease Cas9 can be converted into a programmable transcriptional
repressor, but inefficiencies in target-gene silencing have limited its utility. Here we describe …
repressor, but inefficiencies in target-gene silencing have limited its utility. Here we describe …
KRAB zinc finger proteins
G Ecco, M Imbeault, D Trono - Development, 2017 - journals.biologists.com
Krüppel-associated box domain zinc finger proteins (KRAB-ZFPs) are the largest family of
transcriptional regulators in higher vertebrates. Characterized by an N-terminal KRAB …
transcriptional regulators in higher vertebrates. Characterized by an N-terminal KRAB …
Silencing and transcriptional regulation of endogenous retroviruses: an overview
FK Geis, SP Goff - Viruses, 2020 - mdpi.com
Almost half of the human genome is made up of transposable elements (TEs), and about 8%
consists of endogenous retroviruses (ERVs). ERVs are remnants of ancient exogenous …
consists of endogenous retroviruses (ERVs). ERVs are remnants of ancient exogenous …
Compendium of human transcription factor effector domains
Transcription factors (TFs) regulate gene expression by binding to DNA sequences and
modulating transcriptional activity through their effector domains. Despite the central role of …
modulating transcriptional activity through their effector domains. Despite the central role of …
An epigenetic switch ensures transposon repression upon dynamic loss of DNA methylation in embryonic stem cells
DNA methylation is extensively remodeled during mammalian gametogenesis and
embryogenesis. Most transposons become hypomethylated, raising the question of their …
embryogenesis. Most transposons become hypomethylated, raising the question of their …
KAP1 controls endogenous retroviruses in embryonic stem cells
HM Rowe, J Jakobsson, D Mesnard, J Rougemont… - Nature, 2010 - nature.com
More than forty per cent of the mammalian genome is derived from retroelements, of which
about one-quarter are endogenous retroviruses (ERVs). Some are still active, notably in …
about one-quarter are endogenous retroviruses (ERVs). Some are still active, notably in …
TRIM family proteins and their emerging roles in innate immunity
K Ozato, DM Shin, TH Chang… - Nature reviews …, 2008 - nature.com
The superfamily of tripartite motif-containing (TRIM) proteins is conserved throughout the
metazoan kingdom and has expanded rapidly during vertebrate evolution; there are now …
metazoan kingdom and has expanded rapidly during vertebrate evolution; there are now …
SETDB1: a novel KAP-1-associated histone H3, lysine 9-specific methyltransferase that contributes to HP1-mediated silencing of euchromatic genes by KRAB zinc …
DC Schultz, K Ayyanathan, D Negorev… - Genes & …, 2002 - genesdev.cshlp.org
Posttranslational modification of histones has emerged as a key regulatory signal in
eukaryotic gene expression. Recent genetic and biochemical studies link H3-lysine 9 (H3 …
eukaryotic gene expression. Recent genetic and biochemical studies link H3-lysine 9 (H3 …