The CRISPR tool kit for genome editing and beyond

M Adli - Nature communications, 2018 - nature.com
CRISPR is becoming an indispensable tool in biological research. Once known as the
bacterial immune system against invading viruses, the programmable capacity of the Cas9 …

H3K9me3-dependent heterochromatin: barrier to cell fate changes

JS Becker, D Nicetto, KS Zaret - Trends in Genetics, 2016 - cell.com
Establishing and maintaining cell identity depends on the proper regulation of gene
expression, as specified by transcription factors and reinforced by epigenetic mechanisms …

An enhanced CRISPR repressor for targeted mammalian gene regulation

NC Yeo, A Chavez, A Lance-Byrne, Y Chan, D Menn… - Nature …, 2018 - nature.com
The RNA-guided endonuclease Cas9 can be converted into a programmable transcriptional
repressor, but inefficiencies in target-gene silencing have limited its utility. Here we describe …

KRAB zinc finger proteins

G Ecco, M Imbeault, D Trono - Development, 2017 - journals.biologists.com
Krüppel-associated box domain zinc finger proteins (KRAB-ZFPs) are the largest family of
transcriptional regulators in higher vertebrates. Characterized by an N-terminal KRAB …

Silencing and transcriptional regulation of endogenous retroviruses: an overview

FK Geis, SP Goff - Viruses, 2020 - mdpi.com
Almost half of the human genome is made up of transposable elements (TEs), and about 8%
consists of endogenous retroviruses (ERVs). ERVs are remnants of ancient exogenous …

Compendium of human transcription factor effector domains

LF Soto, Z Li, CS Santoso, A Berenson, I Ho, VX Shen… - Molecular cell, 2022 - cell.com
Transcription factors (TFs) regulate gene expression by binding to DNA sequences and
modulating transcriptional activity through their effector domains. Despite the central role of …

An epigenetic switch ensures transposon repression upon dynamic loss of DNA methylation in embryonic stem cells

M Walter, A Teissandier, R Pérez-Palacios, D Bourc'His - Elife, 2016 - elifesciences.org
DNA methylation is extensively remodeled during mammalian gametogenesis and
embryogenesis. Most transposons become hypomethylated, raising the question of their …

KAP1 controls endogenous retroviruses in embryonic stem cells

HM Rowe, J Jakobsson, D Mesnard, J Rougemont… - Nature, 2010 - nature.com
More than forty per cent of the mammalian genome is derived from retroelements, of which
about one-quarter are endogenous retroviruses (ERVs). Some are still active, notably in …

TRIM family proteins and their emerging roles in innate immunity

K Ozato, DM Shin, TH Chang… - Nature reviews …, 2008 - nature.com
The superfamily of tripartite motif-containing (TRIM) proteins is conserved throughout the
metazoan kingdom and has expanded rapidly during vertebrate evolution; there are now …

SETDB1: a novel KAP-1-associated histone H3, lysine 9-specific methyltransferase that contributes to HP1-mediated silencing of euchromatic genes by KRAB zinc …

DC Schultz, K Ayyanathan, D Negorev… - Genes & …, 2002 - genesdev.cshlp.org
Posttranslational modification of histones has emerged as a key regulatory signal in
eukaryotic gene expression. Recent genetic and biochemical studies link H3-lysine 9 (H3 …