Trichoderma Research in the Genome Era
PK Mukherjee, BA Horwitz… - Annual review of …, 2013 - annualreviews.org
Trichoderma species are widely used in agriculture and industry as biopesticides and
sources of enzymes, respectively. These fungi reproduce asexually by production of conidia …
sources of enzymes, respectively. These fungi reproduce asexually by production of conidia …
Protein structure prediction: conventional and deep learning perspectives
VA Jisna, PB Jayaraj - The protein journal, 2021 - Springer
Protein structure prediction is a way to bridge the sequence-structure gap, one of the main
challenges in computational biology and chemistry. Predicting any protein's accurate …
challenges in computational biology and chemistry. Predicting any protein's accurate …
[HTML][HTML] Orally administered Odoribacter laneus improves glucose control and inflammatory profile in obese mice by depleting circulating succinate
Background Succinate is produced by both human cells and by gut bacteria and couples
metabolism to inflammation as an extracellular signaling transducer. Circulating succinate is …
metabolism to inflammation as an extracellular signaling transducer. Circulating succinate is …
The prevalence, evolution and chromatin signatures of plant regulatory elements
Chromatin accessibility and modification is a hallmark of regulatory DNA, the study of which
led to the discovery of cis-regulatory elements (CREs). Here, we characterize chromatin …
led to the discovery of cis-regulatory elements (CREs). Here, we characterize chromatin …
[HTML][HTML] Convergent losses of decay mechanisms and rapid turnover of symbiosis genes in mycorrhizal mutualists
To elucidate the genetic bases of mycorrhizal lifestyle evolution, we sequenced new fungal
genomes, including 13 ectomycorrhizal (ECM), orchid (ORM) and ericoid (ERM) species …
genomes, including 13 ectomycorrhizal (ECM), orchid (ORM) and ericoid (ERM) species …
MycoCosm portal: gearing up for 1000 fungal genomes
IV Grigoriev, R Nikitin, S Haridas, A Kuo… - Nucleic acids …, 2014 - academic.oup.com
MycoCosm is a fungal genomics portal (http://jgi. doe. gov/fungi), developed by the US
Department of Energy Joint Genome Institute to support integration, analysis and …
Department of Energy Joint Genome Institute to support integration, analysis and …
The genome portal of the Department of Energy Joint Genome Institute: 2014 updates
H Nordberg, M Cantor, S Dusheyko, S Hua… - Nucleic acids …, 2014 - academic.oup.com
Abstract The US Department of Energy (DOE) Joint Genome Institute (JGI), a national user
facility, serves the diverse scientific community by providing integrated high-throughput …
facility, serves the diverse scientific community by providing integrated high-throughput …
[HTML][HTML] Klebsormidium flaccidum genome reveals primary factors for plant terrestrial adaptation
K Hori, F Maruyama, T Fujisawa, T Togashi… - Nature …, 2014 - nature.com
The colonization of land by plants was a key event in the evolution of life. Here we report the
draft genome sequence of the filamentous terrestrial alga Klebsormidium flaccidum (Division …
draft genome sequence of the filamentous terrestrial alga Klebsormidium flaccidum (Division …
[HTML][HTML] Erratum to: comparative analysis of fungal genomes reveals different plant cell wall degrading capacity in fungi
The version of this article published in BMC Genomics 2013, 14: 274, contains 9
unpublished genomes (Botryobasidium botryosum, Gymnopus luxurians, Hypholoma …
unpublished genomes (Botryobasidium botryosum, Gymnopus luxurians, Hypholoma …
[HTML][HTML] Diverse Lifestyles and Strategies of Plant Pathogenesis Encoded in the Genomes of Eighteen Dothideomycetes Fungi
The class Dothideomycetes is one of the largest groups of fungi with a high level of
ecological diversity including many plant pathogens infecting a broad range of hosts. Here …
ecological diversity including many plant pathogens infecting a broad range of hosts. Here …