Genomic evidence of two-staged transmission of the early seventh cholera pandemic

Y Luo, M Payne, S Kaur, S Octavia, R Lan - Nature Communications, 2024 - nature.com
The seventh cholera pandemic started in 1961 in Indonesia and spread across the world in
three waves in the decades that followed. Here, we utilised genomic evidence to detail the …

From acute to persistent infection: revealing phylogenomic variations in Salmonella Agona

EV Waters, WWY Lee, A Ismail Ahmed… - PLoS …, 2024 - journals.plos.org
Salmonella enterica serovar Agona (S. Agona) has been increasingly recognised as a
prominent cause of gastroenteritis. This serovar is a strong biofilm former that can undergo …

Comparative evaluation of commercial DNA isolation approaches for nanopore-only bacterial genome assembly and plasmid recovery

W Kruasuwan, P Sawatwong, P Jenjaroenpun… - Scientific Reports, 2024 - nature.com
Abstract The advent of Oxford Nanopore Technologies has undergone significant
improvements in terms of sequencing costs, accuracy, and sequencing read lengths, making …

Genomic and phenotypic comparison of two variants of multidrug-resistant Salmonella enterica serovar Heidelberg isolated during the 2015–2017 multi-state …

S Burciaga, JM Trachsel, D Sockett, N Aulik… - Frontiers in …, 2023 - frontiersin.org
Salmonella enterica subspecies enterica serovar Heidelberg (Salmonella Heidelberg) has
caused several multistate foodborne outbreaks in the United States, largely associated with …

GWarrange: a pre- and post- genome-wide association studies pipeline for detecting phenotype-associated genome rearrangement events

YL Tam, S Cameron, A Preston… - Microbial …, 2024 - microbiologyresearch.org
The use of k-mers to capture genetic variation in bacterial genome-wide association studies
(bGWAS) has demonstrated its effectiveness in overcoming the plasticity of bacterial …

Diversity, Distribution, and Chromosomal Rearrangements of TRIP1 Repeat Sequences in Escherichia coli

Z Li, X Liu, N Ning, T Li, H Wang - Genes, 2024 - mdpi.com
The bacterial genome contains numerous repeated sequences that greatly affect its
genomic plasticity. The Escherichia coli K-12 genome contains three copies of the TRIP1 …

Prophage induction stimulates ribosomal RNA operon recombination and facilitates genome mobility

J Bowring, H Ingmer - 2025 - researchsquare.com
Bacterial genomes contain multiple ribosomal RNA operons that by homologous
recombination facilitate genome rearrangements. Here we show that a Staphylococcus …

Slow-growing Salmonella enterica Typhi mis-identified as Salmonella Gallinarum in Ibadan, Nigeria

GT Sunmonu, VO Ogunleye, OO Ikhimiukor… - bioRxiv, 2024 - biorxiv.org
Salmonella enterica serovar Typhi is endemic in Nigeria where S. Gallinarum is rarely
reported. Probable S. Gallinarum was blood-cultured from three Ibadan patients within 10 …