[HTML][HTML] A curated list of R packages for ecological niche modelling
N Sillero, JC Campos, S Arenas-Castro… - Ecological Modelling, 2023 - Elsevier
The R language provides most applications (packages) currently available for ecological
niche modelling. In the last few years, these packages have increased substantially. There …
niche modelling. In the last few years, these packages have increased substantially. There …
Predicting into unknown space? Estimating the area of applicability of spatial prediction models
Abstract Machine learning algorithms have become very popular for spatial mapping of the
environment due to their ability to fit nonlinear and complex relationships. However, this …
environment due to their ability to fit nonlinear and complex relationships. However, this …
Collinearity in ecological niche modeling: Confusions and challenges
Ecological niche models are widely used in ecology and biogeography. Maxent is one of the
most frequently used niche modeling tools, and many studies have aimed to optimize its …
most frequently used niche modeling tools, and many studies have aimed to optimize its …
Species distribution modeling in Latin America: a 25-year retrospective review
N Urbina-Cardona, ME Blair… - Tropical …, 2019 - journals.sagepub.com
Species distribution modeling (SDM) is a booming area of research that has had an
exponential increase in use and development in recent years. We performed a search of …
exponential increase in use and development in recent years. We performed a search of …
Assessing the reliability of species distribution projections in climate change research
Aim Forecasting changes in species distribution under future scenarios is one of the most
prolific areas of application for species distribution models (SDMs). However, no consensus …
prolific areas of application for species distribution models (SDMs). However, no consensus …
Modelling species presence‐only data with random forests
The random forest (RF) algorithm is an ensemble of classification or regression trees and is
widely used, including for species distribution modelling (SDM). Many researchers use …
widely used, including for species distribution modelling (SDM). Many researchers use …
SDMtune: An R package to tune and evaluate species distribution models
Balancing model complexity is a key challenge of modern computational ecology,
particularly so since the spread of machine learning algorithms. Species distribution models …
particularly so since the spread of machine learning algorithms. Species distribution models …
The area under the precision‐recall curve as a performance metric for rare binary events
HR Sofaer, JA Hoeting… - Methods in Ecology and …, 2019 - Wiley Online Library
Species distribution models are used to study biogeographic patterns and guide decision‐
making. The variable quality of these models makes it critical to assess whether a model's …
making. The variable quality of these models makes it critical to assess whether a model's …
Without quality presence–absence data, discrimination metrics such as TSS can be misleading measures of model performance
The discriminating capacity (ie ability to correctly classify presences and absences) of
species distribution models (SDM s) is commonly evaluated with metrics such as the area …
species distribution models (SDM s) is commonly evaluated with metrics such as the area …
Target‐group backgrounds prove effective at correcting sampling bias in Maxent models
RA Barber, SG Ball, RKA Morris… - Diversity and …, 2022 - Wiley Online Library
Aim Accounting for sampling bias is the greatest challenge facing presence‐only and
presence‐background species distribution models; no matter what type of model is chosen …
presence‐background species distribution models; no matter what type of model is chosen …