The impact of transposable elements in adaptive evolution

L Schrader, J Schmitz - Molecular Ecology, 2019 - Wiley Online Library
The growing knowledge about the influence of transposable elements (TE s) on (a) long‐
term genome and transcriptome evolution;(b) genomic, transcriptomic and epigenetic …

Origins, evolution, and phenotypic impact of new genes

H Kaessmann - Genome research, 2010 - genome.cshlp.org
Ever since the pre-molecular era, the birth of new genes with novel functions has been
considered to be a major contributor to adaptive evolutionary innovation. Here, I review the …

Turning a hobby into a job: how duplicated genes find new functions

GC Conant, KH Wolfe - Nature Reviews Genetics, 2008 - nature.com
Gene duplication provides raw material for functional innovation. Recent advances have
shed light on two fundamental questions regarding gene duplication: which genes tend to …

New genes as drivers of phenotypic evolution

S Chen, BH Krinsky, M Long - Nature Reviews Genetics, 2013 - nature.com
During the course of evolution, genomes acquire novel genetic elements as sources of
functional and phenotypic diversity, including new genes that originated in recent evolution …

An overview of duplicated gene detection methods: Why the duplication mechanism has to be accounted for in their choice

T Lallemand, M Leduc, C Landès, C Rizzon, E Lerat - Genes, 2020 - mdpi.com
Gene duplication is an important evolutionary mechanism allowing to provide new genetic
material and thus opportunities to acquire new gene functions for an organism, with major …

RNA-based gene duplication: mechanistic and evolutionary insights

H Kaessmann, N Vinckenbosch, M Long - Nature Reviews Genetics, 2009 - nature.com
Gene copies that stem from the mRNAs of parental source genes have long been viewed as
evolutionary dead-ends with little biological relevance. Here we review a range of recent …

New gene evolution: little did we know

M Long, NW VanKuren, S Chen… - Annual review of …, 2013 - annualreviews.org
Genes are perpetually added to and deleted from genomes during evolution. Thus, it is
important to understand how new genes are formed and how they evolve to be critical …

New genes from non-coding sequence: the role of de novo protein-coding genes in eukaryotic evolutionary innovation

A McLysaght, D Guerzoni - Philosophical Transactions of …, 2015 - royalsocietypublishing.org
The origin of novel protein-coding genes de novo was once considered so improbable as to
be impossible. In less than a decade, and especially in the last five years, this view has been …

Gene duplication drives genome expansion in a major lineage of Thaumarchaeota

PO Sheridan, S Raguideau, C Quince, J Holden… - Nature …, 2020 - nature.com
Ammonia-oxidising archaea of the phylum Thaumarchaeota are important organisms in the
nitrogen cycle, but the mechanisms driving their radiation into diverse ecosystems remain …

High rate of chimeric gene origination by retroposition in plant genomes

W Wang, H Zheng, C Fan, J Li, J Shi, Z Cai… - The Plant …, 2006 - academic.oup.com
Retroposition is widely found to play essential roles in origination of new mammalian and
other animal genes. However, the scarcity of retrogenes in plants has led to the assumption …