Towards accurate and reliable resolution of structural variants for clinical diagnosis
Structural variants (SVs) are a major source of human genetic diversity and have been
associated with different diseases and phenotypes. The detection of SVs is difficult, and a …
associated with different diseases and phenotypes. The detection of SVs is difficult, and a …
Quartet RNA reference materials improve the quality of transcriptomic data through ratio-based profiling
Y Yu, W Hou, Y Liu, H Wang, L Dong, Y Mai… - Nature …, 2024 - nature.com
Certified RNA reference materials are indispensable for assessing the reliability of RNA
sequencing to detect intrinsically small biological differences in clinical settings, such as …
sequencing to detect intrinsically small biological differences in clinical settings, such as …
A verified genomic reference sample for assessing performance of cancer panels detecting small variants of low allele frequency
Background Oncopanel genomic testing, which identifies important somatic variants, is
increasingly common in medical practice and especially in clinical trials. Currently, there is a …
increasingly common in medical practice and especially in clinical trials. Currently, there is a …
2022 White Paper on Recent Issues in Bioanalysis: ICH M10 BMV Guideline & Global Harmonization; Hybrid Assays; Oligonucleotides & ADC; Non-Liquid & Rare …
M Szapacs, W Jian, D Spellman, J Cunliffe… - Bioanalysis, 2023 - Taylor & Francis
Abstract The 16th Workshop on Recent Issues in Bioanalysis (16th WRIB) took place in
Atlanta, GA, USA on September 26–30, 2022. Over 1000 professionals representing …
Atlanta, GA, USA on September 26–30, 2022. Over 1000 professionals representing …
Concordance study of a 520-gene next-generation sequencing-based genomic profiling assay of tissue and plasma samples
M Wang, X Chen, Y Dai, D Wu, F Liu, Z Yang… - Molecular Diagnosis & …, 2022 - Springer
Introduction Next-generation sequencing (NGS) enables simultaneous detection of
actionable somatic variants and estimation of genomic signatures such as tumor mutational …
actionable somatic variants and estimation of genomic signatures such as tumor mutational …
The Sequencing Quality Control 2 study: establishing community standards for sequencing in precision medicine
The MicroArray and Sequencing Quality Control (MAQC) consortium is a FDA-led,
community-wide effort to evaluate the use of genomic technologies in clinical applications …
community-wide effort to evaluate the use of genomic technologies in clinical applications …
Clinical validation of a single NGS targeted panel pipeline using the KAPA HyperChoice system for detection of germline, somatic and mitochondrial sequence and …
J Kerkhof, C Rastin, L Schenkel, H Lin… - Expert Review of …, 2023 - Taylor & Francis
Background Comprehensive molecular diagnostics are highly dependent on the technical
performance of next-generation sequencing (NGS) pipelines, which are assessed by data …
performance of next-generation sequencing (NGS) pipelines, which are assessed by data …
Deep oncopanel sequencing reveals within block position-dependent quality degradation in FFPE processed samples
Background Clinical laboratories routinely use formalin-fixed paraffin-embedded (FFPE)
tissue or cell block cytology samples in oncology panel sequencing to identify mutations that …
tissue or cell block cytology samples in oncology panel sequencing to identify mutations that …
Assessments of tumor mutational burden estimation by targeted panel sequencing: A comprehensive simulation analysis
D Li, D Wang, DJ Johann Jr… - … Biology and Medicine, 2023 - journals.sagepub.com
Tumor mutational burden (TMB), when at a high level, is an emerging indicative factor of
sensitivity to immune checkpoint inhibitors. Previous studies have shown that the more …
sensitivity to immune checkpoint inhibitors. Previous studies have shown that the more …
Ultra-deep sequencing data from a liquid biopsy proficiency study demonstrating analytic validity
Recently we reported the accuracy and reproducibility of circulating tumor DNA (ctDNA)
assays using a unique set of reference materials, associated analytical framework, and …
assays using a unique set of reference materials, associated analytical framework, and …