Hydroxyl radical protein footprinting: a mass spectrometry-based structural method for studying the higher order structure of proteins

A McKenzie-Coe, NS Montes, LM Jones - Chemical reviews, 2021 - ACS Publications
Hydroxyl radical protein footprinting (HRPF) coupled to mass spectrometry has been
successfully used to investigate a plethora of protein-related questions. The method, which …

Codon optimization in the production of recombinant biotherapeutics: potential risks and considerations

VP Mauro - BioDrugs, 2018 - Springer
Biotherapeutics are increasingly becoming the mainstay in the treatment of a variety of
human conditions, particularly in oncology and hematology. The production of therapeutic …

Decoding mechanisms by which silent codon changes influence protein biogenesis and function

V Bali, Z Bebok - The international journal of biochemistry & cell biology, 2015 - Elsevier
Scope Synonymous codon usage has been a focus of investigation since the discovery of
the genetic code and its redundancy. The occurrences of synonymous codons vary between …

Structural basis of ligand interaction with atypical chemokine receptor 3

M Gustavsson, L Wang, N Van Gils… - Nature …, 2017 - nature.com
Chemokines drive cell migration through their interactions with seven-transmembrane (7TM)
chemokine receptors on cell surfaces. The atypical chemokine receptor 3 (ACKR3) binds …

Accurate protein structure prediction with hydroxyl radical protein footprinting data

SE Biehn, S Lindert - Nature communications, 2021 - nature.com
Hydroxyl radical protein footprinting (HRPF) in combination with mass spectrometry reveals
the relative solvent exposure of labeled residues within a protein, thereby providing insight …

Flash oxidation (FOX) system: a novel laser-free fast photochemical oxidation protein footprinting platform

JS Sharp, EE Chea, SK Misra, R Orlando… - Journal of the …, 2021 - ACS Publications
Hydroxyl radical protein footprinting (HRPF) is a powerful and flexible technique for probing
changes in protein topography. With the development of the fast photochemical oxidation of …

Rosetta protein structure prediction from hydroxyl radical protein footprinting mass spectrometry data

ML Aprahamian, EE Chea, LM Jones… - Analytical …, 2018 - ACS Publications
In recent years mass spectrometry-based covalent labeling techniques such as hydroxyl
radical footprinting (HRF) have emerged as valuable structural biology techniques, yielding …

Multidomain architecture of estrogen receptor reveals interfacial cross-talk between its DNA-binding and ligand-binding domains

W Huang, Y Peng, J Kiselar, X Zhao… - Nature …, 2018 - nature.com
Human estrogen receptor alpha (hERα) is a hormone-responsive nuclear receptor (NR)
involved in cell growth and survival that contains both a DNA-binding domain (DBD) and a …

High-resolution hydroxyl radical protein footprinting: Biophysics tool for drug discovery

J Kiselar, MR Chance - Annual review of biophysics, 2018 - annualreviews.org
Hydroxyl radical footprinting (HRF) of proteins with mass spectrometry (MS) is a widespread
approach for assessing protein structure. Hydroxyl radicals react with a wide variety of …

Protein footprinting: Auxiliary engine to power the structural biology revolution

MR Chance, ER Farquhar, S Yang, DT Lodowski… - Journal of molecular …, 2020 - Elsevier
Structural biology is entering an exciting time where many new high-resolution structures of
large complexes and membrane proteins are determined regularly. These advances have …