[HTML][HTML] Deleterious variation in natural populations and implications for conservation genetics
Deleterious mutations decrease reproductive fitness and are ubiquitous in genomes. Given
that many organisms face ongoing threats of extinction, there is interest in elucidating the …
that many organisms face ongoing threats of extinction, there is interest in elucidating the …
[PDF][PDF] Deep learning in population genetics
K Korfmann, OE Gaggiotti… - Genome Biology and …, 2023 - academic.oup.com
Population genetics is transitioning into a data-driven discipline thanks to the availability of
large-scale genomic data and the need to study increasingly complex evolutionary …
large-scale genomic data and the need to study increasingly complex evolutionary …
Efficient ancestry and mutation simulation with msprime 1.0
Stochastic simulation is a key tool in population genetics, since the models involved are
often analytically intractable and simulation is usually the only way of obtaining ground-truth …
often analytically intractable and simulation is usually the only way of obtaining ground-truth …
[HTML][HTML] Sequencing of 53,831 diverse genomes from the NHLBI TOPMed Program
Abstract The Trans-Omics for Precision Medicine (TOPMed) programme seeks to elucidate
the genetic architecture and biology of heart, lung, blood and sleep disorders, with the …
the genetic architecture and biology of heart, lung, blood and sleep disorders, with the …
[HTML][HTML] Human demographic history impacts genetic risk prediction across diverse populations
The vast majority of genome-wide association studies (GWASs) are performed in
Europeans, and their transferability to other populations is dependent on many factors (eg …
Europeans, and their transferability to other populations is dependent on many factors (eg …
A unified genealogy of modern and ancient genomes
The sequencing of modern and ancient genomes from around the world has revolutionized
our understanding of human history and evolution. However, the problem of how best to …
our understanding of human history and evolution. However, the problem of how best to …
[HTML][HTML] Creating artificial human genomes using generative neural networks
Generative models have shown breakthroughs in a wide spectrum of domains due to recent
advancements in machine learning algorithms and increased computational power. Despite …
advancements in machine learning algorithms and increased computational power. Despite …
[HTML][HTML] Detecting adaptive introgression in human evolution using convolutional neural networks
Studies in a variety of species have shown evidence for positively selected variants
introduced into a population via introgression from another, distantly related population—a …
introduced into a population via introgression from another, distantly related population—a …
An overview of current population genomics methods for the analysis of whole‐genome resequencing data in eukaryotes
YXC Bourgeois, BH Warren - Molecular Ecology, 2021 - Wiley Online Library
Characterizing the population history of a species and identifying loci underlying local
adaptation is crucial in functional ecology, evolutionary biology, conservation and …
adaptation is crucial in functional ecology, evolutionary biology, conservation and …
[HTML][HTML] Genetic interactions drive heterogeneity in causal variant effect sizes for gene expression and complex traits
Despite the growing number of genome-wide association studies (GWASs), it remains
unclear to what extent gene-by-gene and gene-by-environment interactions influence …
unclear to what extent gene-by-gene and gene-by-environment interactions influence …