[HTML][HTML] GFF utilities: GffRead and GffCompare

G Pertea, M Pertea - F1000Research, 2020 - ncbi.nlm.nih.gov
GTF (Gene Transfer Format) and GFF (General Feature Format) are popular file formats
used by bioinformatics programs to represent and exchange information about various …

[HTML][HTML] Long non-coding RNAs in insects

C Choudhary, S Sharma, KK Meghwanshi, S Patel… - Animals, 2021 - mdpi.com
Simple Summary Long-non-coding RNAs (lncRNAs) are transcripts of more than 200
nucleotides, which lack protein-coding potential. LncRNAs have been well characterized in …

[HTML][HTML] The mechanisms and factors that induce trained immunity in arthropods and mollusks

M Zhao, Z Lin, Z Zheng, D Yao, S Yang… - Frontiers in …, 2023 - frontiersin.org
Besides dividing the organism's immune system into adaptive and innate immunity, it has
long been thought that only adaptive immunity can establish immune memory. However …

[HTML][HTML] Wolbachia Utilizes lncRNAs to Activate the Anti-Dengue Toll Pathway and Balance Reactive Oxygen Species Stress in Aedes aegypti Through a …

W Mao, Q Zeng, L She, H Yuan, Y Luo… - Frontiers in cellular …, 2022 - frontiersin.org
Long non-coding RNAs (lncRNA), a class of RNA molecules without protein coding
potential, are more than 200 nucleotides in length and widely present in a variety of species …

[HTML][HTML] The long non-coding RNA landscape of Candida yeast pathogens

H Hovhannisyan, T Gabaldón - Nature Communications, 2021 - nature.com
Long non-coding RNAs (lncRNAs) constitute a poorly studied class of transcripts with
emerging roles in key cellular processes. Despite efforts to characterize lncRNAs across a …

Identification of putative enhancer-like elements predicts regulatory networks active in planarian adult stem cells

J Neiro, D Sridhar, A Dattani, A Aboobaker - Elife, 2022 - elifesciences.org
Planarians have become an established model system to study regeneration and stem cells,
but the regulatory elements in the genome remain almost entirely undescribed. Here, by …

[HTML][HTML] Identification of long non-coding RNA-mRNA interactions and genome-wide lncRNA annotation in animal transcriptome profiling

YB Park, JM Kim - Journal of Animal Science and Technology, 2023 - ncbi.nlm.nih.gov
Protein-translated mRNA analysis has been extensively used to determine the function of
various traits in animals. The non-coding RNA (ncRNA), which was known to be non …

[HTML][HTML] Recent advances and future potential of long non-coding RNAs in insects

J Zafar, J Huang, X Xu, F Jin - International journal of molecular sciences, 2023 - mdpi.com
Over the last decade, long non-coding RNAs (lncRNAs) have witnessed a steep rise in
interest amongst the scientific community. Because of their functional significance in several …

Integrated Analysis of Coding Genes and Non-coding RNAs Associated with Shell Color in the Pacific Oyster (Crassostrea gigas)

Z Li, Q Li, S Liu, Z Han, L Kong, H Yu - Marine Biotechnology, 2021 - Springer
Molluscan shell color polymorphism is important in genetic breeding, while the molecular
information mechanism for shell coloring is unclear. Here, high-throughput RNA sequencing …

Temperature modulates immune gene expression in mosquitoes during arbovirus infection

BMCR Wimalasiri-Yapa, RA Barrero… - Open …, 2021 - royalsocietypublishing.org
The principal vector of dengue, Zika and chikungunya viruses is the mosquito Aedes
aegypti, with its ability to transmit pathogens influenced by ambient temperature. We use …