[HTML][HTML] GFF utilities: GffRead and GffCompare
GTF (Gene Transfer Format) and GFF (General Feature Format) are popular file formats
used by bioinformatics programs to represent and exchange information about various …
used by bioinformatics programs to represent and exchange information about various …
[HTML][HTML] Long non-coding RNAs in insects
C Choudhary, S Sharma, KK Meghwanshi, S Patel… - Animals, 2021 - mdpi.com
Simple Summary Long-non-coding RNAs (lncRNAs) are transcripts of more than 200
nucleotides, which lack protein-coding potential. LncRNAs have been well characterized in …
nucleotides, which lack protein-coding potential. LncRNAs have been well characterized in …
[HTML][HTML] The mechanisms and factors that induce trained immunity in arthropods and mollusks
M Zhao, Z Lin, Z Zheng, D Yao, S Yang… - Frontiers in …, 2023 - frontiersin.org
Besides dividing the organism's immune system into adaptive and innate immunity, it has
long been thought that only adaptive immunity can establish immune memory. However …
long been thought that only adaptive immunity can establish immune memory. However …
[HTML][HTML] Wolbachia Utilizes lncRNAs to Activate the Anti-Dengue Toll Pathway and Balance Reactive Oxygen Species Stress in Aedes aegypti Through a …
W Mao, Q Zeng, L She, H Yuan, Y Luo… - Frontiers in cellular …, 2022 - frontiersin.org
Long non-coding RNAs (lncRNA), a class of RNA molecules without protein coding
potential, are more than 200 nucleotides in length and widely present in a variety of species …
potential, are more than 200 nucleotides in length and widely present in a variety of species …
[HTML][HTML] The long non-coding RNA landscape of Candida yeast pathogens
H Hovhannisyan, T Gabaldón - Nature Communications, 2021 - nature.com
Long non-coding RNAs (lncRNAs) constitute a poorly studied class of transcripts with
emerging roles in key cellular processes. Despite efforts to characterize lncRNAs across a …
emerging roles in key cellular processes. Despite efforts to characterize lncRNAs across a …
Identification of putative enhancer-like elements predicts regulatory networks active in planarian adult stem cells
Planarians have become an established model system to study regeneration and stem cells,
but the regulatory elements in the genome remain almost entirely undescribed. Here, by …
but the regulatory elements in the genome remain almost entirely undescribed. Here, by …
[HTML][HTML] Identification of long non-coding RNA-mRNA interactions and genome-wide lncRNA annotation in animal transcriptome profiling
YB Park, JM Kim - Journal of Animal Science and Technology, 2023 - ncbi.nlm.nih.gov
Protein-translated mRNA analysis has been extensively used to determine the function of
various traits in animals. The non-coding RNA (ncRNA), which was known to be non …
various traits in animals. The non-coding RNA (ncRNA), which was known to be non …
[HTML][HTML] Recent advances and future potential of long non-coding RNAs in insects
J Zafar, J Huang, X Xu, F Jin - International journal of molecular sciences, 2023 - mdpi.com
Over the last decade, long non-coding RNAs (lncRNAs) have witnessed a steep rise in
interest amongst the scientific community. Because of their functional significance in several …
interest amongst the scientific community. Because of their functional significance in several …
Integrated Analysis of Coding Genes and Non-coding RNAs Associated with Shell Color in the Pacific Oyster (Crassostrea gigas)
Molluscan shell color polymorphism is important in genetic breeding, while the molecular
information mechanism for shell coloring is unclear. Here, high-throughput RNA sequencing …
information mechanism for shell coloring is unclear. Here, high-throughput RNA sequencing …
Temperature modulates immune gene expression in mosquitoes during arbovirus infection
BMCR Wimalasiri-Yapa, RA Barrero… - Open …, 2021 - royalsocietypublishing.org
The principal vector of dengue, Zika and chikungunya viruses is the mosquito Aedes
aegypti, with its ability to transmit pathogens influenced by ambient temperature. We use …
aegypti, with its ability to transmit pathogens influenced by ambient temperature. We use …