Challenges in measuring and understanding biological noise
Biochemical reactions are intrinsically stochastic, leading to variation in the production of
mRNAs and proteins within cells. In the scientific literature, this source of variation is typically …
mRNAs and proteins within cells. In the scientific literature, this source of variation is typically …
Bacterial growth: a statistical physicist's guide
Bacterial growth presents many beautiful phenomena that pose new theoretical challenges
to statistical physicists, and are also amenable to laboratory experimentation. This review …
to statistical physicists, and are also amenable to laboratory experimentation. This review …
Deep learning automates the quantitative analysis of individual cells in live-cell imaging experiments
Live-cell imaging has opened an exciting window into the role cellular heterogeneity plays
in dynamic, living systems. A major critical challenge for this class of experiments is the …
in dynamic, living systems. A major critical challenge for this class of experiments is the …
Bacterial persisters are a stochastically formed subpopulation of low-energy cells
S Manuse, Y Shan, SJ Canas-Duarte, S Bakshi… - PLoS …, 2021 - journals.plos.org
Persisters represent a small subpopulation of non-or slow-growing bacterial cells that are
tolerant to killing by antibiotics. Despite their prominent role in the recalcitrance of chronic …
tolerant to killing by antibiotics. Despite their prominent role in the recalcitrance of chronic …
Mechanistic origin of cell-size control and homeostasis in bacteria
Evolutionarily divergent bacteria share a common phenomenological strategy for cell-size
homeostasis under steady-state conditions. In the presence of inherent physiological …
homeostasis under steady-state conditions. In the presence of inherent physiological …
Gateways to the FANTOM5 promoter level mammalian expression atlas
M Lizio, J Harshbarger, H Shimoji, J Severin… - Genome biology, 2015 - Springer
The FANTOM5 project investigates transcription initiation activities in more than 1,000
human and mouse primary cells, cell lines and tissues using CAGE. Based on manual …
human and mouse primary cells, cell lines and tissues using CAGE. Based on manual …
Exploiting nongenetic cell-to-cell variation for enhanced biosynthesis
Biosynthesis enables renewable production of manifold compounds, yet often biosynthetic
performance must be improved for it to be economically feasible. Nongenetic, cell-to-cell …
performance must be improved for it to be economically feasible. Nongenetic, cell-to-cell …
A fast chemical reprogramming system promotes cell identity transition through a diapause-like state
Cellular reprogramming by only small molecules holds enormous potentials for regenerative
medicine. However, chemical reprogramming remains a slow process and labour intensive …
medicine. However, chemical reprogramming remains a slow process and labour intensive …
Rapid cell-free forward engineering of novel genetic ring oscillators
While complex dynamic biological networks control gene expression in all living organisms,
the forward engineering of comparable synthetic networks remains challenging. The current …
the forward engineering of comparable synthetic networks remains challenging. The current …
Size control in mammalian cells involves modulation of both growth rate and cell cycle duration
Despite decades of research, how mammalian cell size is controlled remains unclear
because of the difficulty of directly measuring growth at the single-cell level. Here we report …
because of the difficulty of directly measuring growth at the single-cell level. Here we report …