Symbolic recording of signalling and cis-regulatory element activity to DNA

W Chen, J Choi, X Li, JF Nathans, B Martin, W Yang… - Nature, 2024 - nature.com
Measurements of gene expression or signal transduction activity are conventionally
performed using methods that require either the destruction or live imaging of a biological …

The logic of monsters: development and morphological diversity in stem-cell-based embryo models

D Cao, S Garai, J DiFrisco… - Interface Focus, 2024 - royalsocietypublishing.org
Organoids and stem-cell-based embryo models (SEMs) are imperfect organ or embryo
representations that explore a much larger space of possible forms, or morphospace …

Three‐dimensional stem cell models of mammalian gastrulation

DA Turner, A Martinez Arias - BioEssays, 2024 - Wiley Online Library
Gastrulation is a key milestone in the development of an organism. It is a period of cell
proliferation and coordinated cellular rearrangement, that creates an outline of the body …

Retinoic acid induces human gastruloids with posterior embryo-like structures

N Hamazaki, W Yang, CA Kubo, C Qiu, BK Martin… - Nature Cell …, 2024 - nature.com
Gastruloids are a powerful in vitro model of early human development. However, although
elongated and composed of all three germ layers, human gastruloids do not morphologically …

Recording morphogen signals reveals mechanisms underlying gastruloid symmetry breaking

HM McNamara, SC Solley, B Adamson, MM Chan… - Nature Cell …, 2024 - nature.com
Aggregates of stem cells can break symmetry and self-organize into embryo-like structures
with complex morphologies and gene expression patterns. Mechanisms including reaction …

ZNF143 is a transcriptional regulator of nuclear-encoded mitochondrial genes that acts independently of looping and CTCF

MD Magnitov, M Maresca, NA Saiz, H Teunissen… - Molecular Cell, 2024 - cell.com
Gene expression is orchestrated by transcription factors, which function within the context of
a three-dimensional genome. Zinc-finger protein 143 (ZNF143/ZFP143) is a transcription …

Gastruloid-derived primordial germ cell-like cells develop dynamically within integrated tissues

CB Cooke, C Barrington, P Baillie-Benson… - …, 2023 - journals.biologists.com
Primordial germ cells (PGCs) are the early embryonic precursors of gametes–sperm and
egg cells. PGC-like cells (PGCLCs) can currently be derived in vitro from pluripotent cells …

Optogenetic control of Wnt signaling models cell-intrinsic embryogenic patterning using 2D human pluripotent stem cell culture

NA Repina, HJ Johnson, X Bao… - …, 2023 - journals.biologists.com
In embryonic stem cell (ESC) models for early development, spatially and temporally varying
patterns of signaling and cell types emerge spontaneously. However, mechanistic insight …

Mouse neural tube organoids self-organize floorplate through BMP-mediated cluster competition

T Krammer, HT Stuart, E Gromberg, K Ishihara… - Developmental Cell, 2024 - cell.com
During neural tube (NT) development, the notochord induces an organizer, the floorplate,
which secretes Sonic Hedgehog (SHH) to pattern neural progenitors. Conversely, NT …

Integrated molecular-phenotypic profiling reveals metabolic control of morphological variation in stembryos

A Villaronga Luque, R Savill, N López-Anguita… - bioRxiv, 2023 - biorxiv.org
Mammalian stem-cell-based models of embryo development (stembryos) hold great promise
in basic and applied research. However, considerable phenotypic variation despite identical …