Data-driven multiscale computational models of cortical and subcortical regions

S Ramaswamy - Current opinion in neurobiology, 2024 - Elsevier
Data-driven computational models of neurons, synapses, microcircuits, and mesocircuits
have become essential tools in modern brain research. The goal of these multiscale models …

2022 roadmap on neuromorphic computing and engineering

DV Christensen, R Dittmann… - Neuromorphic …, 2022 - iopscience.iop.org
Modern computation based on von Neumann architecture is now a mature cutting-edge
science. In the von Neumann architecture, processing and memory units are implemented …

[HTML][HTML] Reconstruction and simulation of neocortical microcircuitry

H Markram, E Muller, S Ramaswamy, MW Reimann… - Cell, 2015 - cell.com
We present a first-draft digital reconstruction of the microcircuitry of somatosensory cortex of
juvenile rat. The reconstruction uses cellular and synaptic organizing principles to …

[HTML][HTML] Cliques of neurons bound into cavities provide a missing link between structure and function

MW Reimann, M Nolte, M Scolamiero… - Frontiers in …, 2017 - frontiersin.org
The lack of a formal link between neural network structure and its emergent function has
hampered our understanding of how the brain processes information. We have now come …

[HTML][HTML] Simulation of transcranial magnetic stimulation in head model with morphologically-realistic cortical neurons

AS Aberra, B Wang, WM Grill, AV Peterchev - Brain stimulation, 2020 - Elsevier
Background Transcranial magnetic stimulation (TMS) enables non-invasive modulation of
brain activity with both clinical and research applications, but fundamental questions remain …

Modeling the cerebellar microcircuit: new strategies for a long-standing issue

E D'Angelo, A Antonietti, S Casali… - Frontiers in cellular …, 2016 - frontiersin.org
The cerebellar microcircuit has been the work bench for theoretical and computational
modeling since the beginning of neuroscientific research. The regular neural architecture of …

SpikeInterface, a unified framework for spike sorting

AP Buccino, CL Hurwitz, S Garcia, J Magland… - Elife, 2020 - elifesciences.org
Much development has been directed toward improving the performance and automation of
spike sorting. This continuous development, while essential, has contributed to an over …

Truncated proposals for scalable and hassle-free simulation-based inference

M Deistler, PJ Goncalves… - Advances in Neural …, 2022 - proceedings.neurips.cc
Simulation-based inference (SBI) solves statistical inverse problems by repeatedly running a
stochastic simulator and inferring posterior distributions from model-simulations. To improve …

Interneuronal mechanisms of hippocampal theta oscillations in a full-scale model of the rodent CA1 circuit

MJ Bezaire, I Raikov, K Burk, D Vyas, I Soltesz - Elife, 2016 - elifesciences.org
The hippocampal theta rhythm plays important roles in information processing; however, the
mechanisms of its generation are not well understood. We developed a data-driven …

KCNQ2/3 gain-of-function variants and cell excitability: differential effects in CA1 versus L2/3 pyramidal neurons

N Varghese, B Moscoso, A Chavez… - Journal of …, 2023 - Soc Neuroscience
Gain-of-function (GOF) pathogenic variants in the potassium channels KCNQ2 and KCNQ3
lead to hyperexcitability disorders such as epilepsy and autism spectrum disorders …