Lessons from the COVID-19 pandemic for advancing computational drug repurposing strategies

G Galindez, J Matschinske, TD Rose… - Nature Computational …, 2021 - nature.com
Responding quickly to unknown pathogens is crucial to stop uncontrolled spread of
diseases that lead to epidemics, such as the novel coronavirus, and to keep protective …

Structure and dynamics of molecular networks: a novel paradigm of drug discovery: a comprehensive review

P Csermely, T Korcsmáros, HJM Kiss, G London… - Pharmacology & …, 2013 - Elsevier
Despite considerable progress in genome-and proteome-based high-throughput screening
methods and in rational drug design, the increase in approved drugs in the past decade did …

Controllability analysis of the directed human protein interaction network identifies disease genes and drug targets

A Vinayagam, TE Gibson, HJ Lee… - Proceedings of the …, 2016 - National Acad Sciences
The protein–protein interaction (PPI) network is crucial for cellular information processing
and decision-making. With suitable inputs, PPI networks drive the cells to diverse functional …

VirHostNet 2.0: surfing on the web of virus/host molecular interactions data

T Guirimand, S Delmotte, V Navratil - Nucleic acids research, 2015 - academic.oup.com
Abstract VirHostNet release 2.0 (http://virhostnet. prabi. fr) is a knowledgebase dedicated to
the network-based exploration of virus–host protein–protein interactions. Since the previous …

[HTML][HTML] Mutations at protein-protein interfaces: Small changes over big surfaces have large impacts on human health

HC Jubb, AP Pandurangan, MA Turner… - Progress in biophysics …, 2017 - Elsevier
Many essential biological processes including cell regulation and signalling are mediated
through the assembly of protein complexes. Changes to protein-protein interaction (PPI) …

Protein–protein interactions in virus–host systems

AF Brito, JW Pinney - Frontiers in microbiology, 2017 - frontiersin.org
To study virus–host protein interactions, knowledge about viral and host protein
architectures and repertoires, their particular evolutionary mechanisms, and information on …

VirusMentha: a new resource for virus-host protein interactions

A Calderone, L Licata, G Cesareni - Nucleic acids research, 2015 - academic.oup.com
Viral infections often cause diseases by perturbing several cellular processes in the infected
host. Viral proteins target host proteins and either form new complexes or modulate the …

IRGM is a common target of RNA viruses that subvert the autophagy network

IP Grégoire, C Richetta, L Meyniel-Schicklin… - PLoS …, 2011 - journals.plos.org
Autophagy is a conserved degradative pathway used as a host defense mechanism against
intracellular pathogens. However, several viruses can evade or subvert autophagy to insure …

HPIDB-a unified resource for host-pathogen interactions

R Kumar, B Nanduri - BMC bioinformatics, 2010 - Springer
Abstract Background Protein-protein interactions (PPIs) play a crucial role in initiating
infection in a host-pathogen system. Identification of these PPIs is important for …

Computational approaches for prediction of pathogen-host protein-protein interactions

E Nourani, F Khunjush, S Durmuş - Frontiers in microbiology, 2015 - frontiersin.org
Infectious diseases are still among the major and prevalent health problems, mostly
because of the drug resistance of novel variants of pathogens. Molecular interactions …